Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J20
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 794 PXPPPXPPPPXHPXP 838
           P P P PPPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 785 PXIPXPPPXPPPPXHP 832
           P  P PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 800  PPPXPPPP 823
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 320 KSCSLLEITCRSSTHRPEEMPKR 252
           + CS+  IT  +ST  P+  P+R
Sbjct: 401 QKCSIESITSVNSTSSPKPFPRR 423


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 106 FLFLAVTYLDGQQFRYDYTYFRDINGWL 189
           F F  + ++  +   Y+Y ++  + GWL
Sbjct: 507 FTFNIIKFVPVKYLTYEYPWWSHVLGWL 534


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 106 FLFLAVTYLDGQQFRYDYTYFRDINGWL 189
           F F  + ++  +   Y+Y ++  + GWL
Sbjct: 560 FTFNIIKFVPVKYLTYEYPWWSHVLGWL 587


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,786
Number of Sequences: 438
Number of extensions: 6288
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)