Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J18
         (948 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.37 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.37 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   1.1  
At2g07280.1 68415.m00835 hypothetical protein                          29   4.5  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    28   7.9  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 581 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFKVLS 423
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 581 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFKVLS 423
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 300 KAVEEFLKMYRTGFMPKNLEFSVFYD 377
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At2g07280.1 68415.m00835 hypothetical protein
          Length = 401

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
 Frame = +3

Query: 225 NTDDEYYKIGKDYDIEMNM---DNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEA 395
           NTD E  ++G D    ++    D      +V+  + +   G + + +EF    D + D  
Sbjct: 269 NTDKESEEVGLDVPTVISQPLKDKPQEFPSVDINIGLLNDGTLNREIEFPES-DLVMDPF 327

Query: 396 I--ALFHLFYYAKDFETFYKSACFARVHLNQGQ----FLYAFYIAVIQRPDC-HGFVV 548
           I    +H+  Y  + E  +K+    +VH         FL+ F I++I  P C H F +
Sbjct: 328 IFPVPYHVSQYQPNGEQVFKTPIHNQVHHTIPNTYTLFLHCFCISIINTPQCKHPFQI 385


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 225 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 320
           N +DEY K   DYD  + +D  T K+A  + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,583
Number of Sequences: 28952
Number of extensions: 336154
Number of successful extensions: 851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)