Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J17
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    89   1e-18
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.96 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.0  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 37/54 (68%), Positives = 42/54 (77%)
 Frame = +2

Query: 131 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 292
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 21/68 (30%), Positives = 22/68 (32%)
 Frame = -1

Query: 931 GGXXXFGXXXXXGGGGLXGKXPXTXGXXFXGXGGLLGGAXGXKXXXRGGXPPXXGGGXXX 752
           GG   F       GGG  G      G    G GG  GGA G +    GG     GG    
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR-GGARGGRGGSSGGRGGAKGGAKVI 74

Query: 751 XPPXGGGG 728
             P    G
Sbjct: 75  IEPHRHAG 82


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +2

Query: 692 PPPSXCXSGXXXSPPPXGXXXXXXPP 769
           PPP+    G    PPP G      PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 877 PXGPXPPXXXPPQKXXPPXP 936
           P  P PP   PP +  PP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,742
Number of Sequences: 5004
Number of extensions: 51111
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)