Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J16
         (928 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    46   0.001
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    40   0.12 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    39   0.21 
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 373 VXSALMNRPTXGXXRFAYWALFRFL 447
           V +ALMNRPT G  RFAYWALFRFL
Sbjct: 23  VPAALMNRPTRGERRFAYWALFRFL 47


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 39.5 bits (88), Expect = 0.12
 Identities = 19/29 (65%), Positives = 20/29 (68%)
 Frame = -2

Query: 540 PXIXGIXXXPPLSELIPLAAAERPSAATQ 454
           P I  I   PPLSEL PLAA ERPS A+Q
Sbjct: 33  PLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 38.7 bits (86), Expect = 0.21
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = -1

Query: 454 VXRGSGRAPNTQTAXPRALADSLMQ 380
           V R +  APNTQTA PRALADSLMQ
Sbjct: 324 VKRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 451 SLSRCARSFGCGERYQLT 504
           SL+R ARSFGCGERY+LT
Sbjct: 41  SLTRYARSFGCGERYRLT 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,909,451
Number of Sequences: 1657284
Number of extensions: 5256455
Number of successful extensions: 9751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9724
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85260991088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)