Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J16
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0056 + 16898169-16898181,16898683-16898758,16898871-168989...    28   9.2  

>03_04_0056 +
           16898169-16898181,16898683-16898758,16898871-16898916,
           16899013-16899127,16899217-16899296,16899373-16899966,
           16900059-16900163,16900569-16900907
          Length = 455

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 520 RXTAFE*ADTARRSRTTERSDSVXRGSGRAPNTQT 416
           R T    +DT R +R  ER   V +GS R+ +T+T
Sbjct: 183 RKTGLAISDTQRLARIKERLSYVFKGSNRSQDTKT 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,047
Number of Sequences: 37544
Number of extensions: 184655
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)