Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_J15
(945 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1751 - 29215074-29216270 32 0.76
03_01_0259 - 1996427-1998772 31 1.3
01_01_0570 - 4231100-4232560 30 2.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 4.1
06_03_0757 + 24267599-24268882 29 5.4
06_02_0175 - 12624608-12625297 29 5.4
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 5.4
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 5.4
07_03_1071 + 23753883-23754752 29 7.1
05_03_0469 + 14439472-14440905 29 7.1
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 28 9.4
05_03_0618 - 16262826-16263097,16263111-16263183 28 9.4
03_02_0950 + 12661008-12662312,12662403-12662576 28 9.4
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 9.4
>07_03_1751 - 29215074-29216270
Length = 398
Score = 31.9 bits (69), Expect = 0.76
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = -3
Query: 892 GGGFXXRKXGGXXGNFXXGAPGGXXGFWXGAHXXXXGVKXXGEXXGXXRR--NKNVXGRN 719
GGGF K GG G F G GG G G G G G V G +
Sbjct: 314 GGGFGGGKGGGFGGGFGGGKGGGVGGGAGGGFGGGGGAGAGGGFGGGKGGGFGGGVGGGH 373
Query: 718 XEGVXGXQGG 689
G G GG
Sbjct: 374 GAGGGGAGGG 383
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 892 GGGFXXRKXGGXXGNFXXGAPGGXXGFWXGAHXXXXGVKXXGEXXG 755
GGGF G G F G GG G G H G G G
Sbjct: 342 GGGFGGGGGAGAGGGFGGGKGGGFGGGVGGGHGAGGGGAGGGGGFG 387
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 403 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 507
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>01_01_0570 - 4231100-4232560
Length = 486
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/68 (33%), Positives = 24/68 (35%)
Frame = -3
Query: 892 GGGFXXRKXGGXXGNFXXGAPGGXXGFWXGAHXXXXGVKXXGEXXGXXRRNKNVXGRNXE 713
GGG G G F G GG GF GA GV GE G + G
Sbjct: 173 GGGAGAGGGVGGGGRFGGGGMGGGGGFGGGA---GGGVGGGGELGGGGMGGGSGFGGGAG 229
Query: 712 GVXGXQGG 689
G G GG
Sbjct: 230 GGFGAGGG 237
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 471 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 385
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>06_03_0757 + 24267599-24268882
Length = 427
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 936 GXKNNRGTRXXHGXXGGGXPXEXGGGXGG 850
G NR R +G GGG GGG GG
Sbjct: 283 GGNTNRRNRKGNGGRGGGNGGGNGGGSGG 311
>06_02_0175 - 12624608-12625297
Length = 229
Score = 29.1 bits (62), Expect = 5.4
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = -3
Query: 922 SGNPXXPRXXGGGFXXRKXGGXXGNFXXGAPGGXXGFWXGAHXXXXGVKXXGEXXGXXRR 743
SG GGG GG G G GG W G K E G
Sbjct: 93 SGGGGSSGGGGGGGGGGGGGGGGGGGGGGGGGGGRRCWWGCGNGRRRHKGGKEGGGGGEG 152
Query: 742 NKNV-XGRNXEGVXGXQGG 689
K + R EGV G G
Sbjct: 153 RKGIRTEREREGVGGGGAG 171
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 190 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 360
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 361 KEIVK 375
+ +
Sbjct: 551 DPMTR 555
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 29.1 bits (62), Expect = 5.4
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = -1
Query: 339 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 193
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 192 LLRQYVISSWCKCGVRSQRTHGEDEGK 112
L + + C+ V S R HG +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>07_03_1071 + 23753883-23754752
Length = 289
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 912 RXXHGXXGGGXPXEXGGGXGG 850
R G GGG P E GGG GG
Sbjct: 63 RQVGGAGGGGAPGEGGGGGGG 83
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 497 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPP 589
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 648 DDTVITRTFRVIELQVLFVLGGHDLEVNSVVFQHGGKLPGDFLAGFVFG 502
DDT V+ ++ VLGG D+ V F GG + L GF+FG
Sbjct: 155 DDTTTEDDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCP-LQGFLFG 202
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 171 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 85
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 175 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 276
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 9.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 487 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 621
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,838,409
Number of Sequences: 37544
Number of extensions: 473886
Number of successful extensions: 2263
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2124
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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