Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J14
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    31   0.29 
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    29   0.89 
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   2.7  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    27   2.7  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   3.6  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 89  IMASKFKSEKIGIVGSGLIGRSWA--MLFASVGYQVTVYDVVAKQITDAIEDIKY 247
           + +S FKS KI IVG+G +G + A  +L + +  ++ + D+  K+      D+ +
Sbjct: 13  VRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNH 67


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 101 KFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVV 208
           + + + +GI+G G IG   ++L  ++G  V  YD++
Sbjct: 192 EIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDIL 227


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 116 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 202
           ++GI+G G +GR +A   +  G++V V D
Sbjct: 6   QVGIIGFGDMGRLYAEYISKAGWRVNVCD 34


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 113 EKIGIVGSGLIGRSWAMLFASVGYQVTVYD 202
           +++GI+G G IG+S+A     +G ++  ++
Sbjct: 160 KRVGIIGMGAIGKSFAQKILPLGCEIVYHN 189


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 74  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYD 202
           V+ST  ++     +K+ ++G G+IG     +++ +G +VTV +
Sbjct: 205 VSSTGALSLSEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVVE 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,683
Number of Sequences: 5004
Number of extensions: 64247
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)