Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J14
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249...    49   4e-06
06_01_0080 + 644021-645463                                             30   2.2  
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571           29   3.8  
04_03_0515 + 16698589-16701066                                         29   5.0  
01_06_0663 - 30991390-30992340                                         29   6.6  
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465...    28   8.7  

>01_06_1005 +
           33723743-33723946,33724035-33724256,33724789-33724901,
           33725581-33725950
          Length = 302

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
 Frame = +2

Query: 119 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDG-LLRGELK 295
           +G++G+G +G   A L A+ G  V + D     ++ A++ I   L  L   G L +   +
Sbjct: 13  VGVIGAGQMGSGIAQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCE 72

Query: 296 AS-EQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTI 448
            S EQ +C+    +L    + A  V E + E+ D+KKK+F  LD +   + I
Sbjct: 73  HSIEQIKCVSSVQEL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAI 120


>06_01_0080 + 644021-645463
          Length = 480

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/45 (22%), Positives = 27/45 (60%)
 Frame = +2

Query: 116 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 250
           +IG+ G  ++G++ A+  A  G+ ++VY+    ++ + ++  K +
Sbjct: 5   RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVE 49


>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
          Length = 527

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
 Frame = +2

Query: 74  VASTVIMASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQL 253
           V+ST  +A     +K+ ++G+G IG     ++  +G +VTV +  +  +     +I+ Q 
Sbjct: 222 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWNRLGSEVTVVEFASDIVPSMDGEIRKQF 281

Query: 254 HTLENDGLLRGELKASEQFQCIKGS---TDLETAVKGAIFVQEC 376
             +     ++  LK         GS     +E A  G   V EC
Sbjct: 282 QRMLEKQKMKFMLKTKVVGVDTSGSGVKLTVEPAAGGEQSVLEC 325


>04_03_0515 + 16698589-16701066
          Length = 825

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 467 YLLNLIISCYRQLRCRDSGTPFF 399
           Y  N++I+CYR+ R  D G P F
Sbjct: 190 YTYNILINCYRRARRPDLGLPVF 212


>01_06_0663 - 30991390-30992340
          Length = 316

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 116 KIGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQ 217
           ++  VG+G++G+S A    + GY +TVY+  A +
Sbjct: 21  RVAWVGTGVMGQSMAGHLLAAGYALTVYNRTASK 54


>03_01_0633 -
           4649267-4649383,4649480-4649641,4649735-4649895,
           4650056-4650080,4650155-4650237,4650332-4650704
          Length = 306

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 144 IKPLPTIPIFSDLNLDAMITVDATVPHDKPXRESN 40
           +KP   IPI +D  L+  + +D  + H+ P ++ N
Sbjct: 252 VKPKQDIPILADKYLNKELELDKFITHEVPLKDIN 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,485,056
Number of Sequences: 37544
Number of extensions: 410355
Number of successful extensions: 911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)