Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J14
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)               48   1e-05
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   4e-04
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       32   0.54 
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)                   31   0.95 
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                 29   5.1  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      28   8.9  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/107 (26%), Positives = 47/107 (43%)
 Frame = +2

Query: 371 ECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQGHCFSSGESTLL 550
           EC PENL+LKKKVFQNL++ +  + +                     Q    +   +   
Sbjct: 1   ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60

Query: 551 RTPXLKLSQXPGLSLKLLRXPGKLWKRSDRQPVSLTRXIDGFVLNRI 691
             P +++   P     ++    KL K   + PV L +  +GF++NR+
Sbjct: 61  YVPLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRL 107



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +1

Query: 556 PLXEIVPAPWTKPEVAKXTREIMEEIGPPASFFDQGNRRICFESNSYAILDEVWRL 723
           PL E++PAPWT   V + T ++M++IG       +           YA++ E WRL
Sbjct: 63  PLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWRL 118


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
 Frame = +2

Query: 119 IGIVGSGLIGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLLRGELKA 298
           + ++G+GL+G   A   A  G +V +YD  A+    A+E  K  L   + + L R E+ A
Sbjct: 8   VAVIGAGLMGTCIAGELAYHGARVNLYDRSAQ----AMEKSKEML-IQQKEQLKREEVMA 62

Query: 299 SEQF-QCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTI 448
           +  F   +     LE AV  +  + E   ENL++KK VF+++      N +
Sbjct: 63  TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAV 113


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 116 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 202
           ++ IVG GL+G   A+ FA  GY+V +Y+
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193


>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
          Length = 456

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +2

Query: 92  MASKFKSEKIGIVGSGLIGRSWAMLFASVGYQVTV 196
           ++S F  +++ ++G+G+IG + A    + GY+VTV
Sbjct: 13  LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47


>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 116 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 202
           K+GIVGSG+ G S A L    G +V +Y+
Sbjct: 2   KVGIVGSGIAGLSAAWLLTLRGNEVHLYE 30


>SB_29581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = -2

Query: 370 LNKYSSFNCGFQIRRPFYTLKLFASFELAS*QTIVFKGMQLVFDVLNGIGNLFCDYIIYS 191
           +++Y    C  +I  P    KL A+ E A    I+ KG   VFD L   GN+     IY 
Sbjct: 22  MSQYGRLFCSTRIPHPGKD-KL-ATHEGARHMLIMHKGKFFVFDTLTTDGNIVSTSTIYE 79

Query: 190 NL 185
           NL
Sbjct: 80  NL 81


>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 765

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +2

Query: 218 ITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLETAVKGAIFVQECVPENLD- 394
           +  AIE  +      EN  L+ GE+  S+  +     T L   VK  I     V E+L  
Sbjct: 105 LAQAIERCRMNEMRKENRDLVLGEINKSDSMRICVDLTQLNEGVKWEIQPMPSVDESLSK 164

Query: 395 -LKKKVFQNLDS 427
             + KVF  LD+
Sbjct: 165 LSQGKVFSKLDA 176


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 143 IGRSWAMLFASVGYQVTVYDVVAKQITDAIEDIKYQ 250
           +GR W +   ++ +QV   D V KQ   A++D  Y+
Sbjct: 1   MGRLWILAIPAIIWQVCTTDAVRKQQLRAVDDETYK 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,716,147
Number of Sequences: 59808
Number of extensions: 467175
Number of successful extensions: 1050
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)