Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J12
         (979 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.60 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 490 SHVLSCVIPLILWITVLPPLSELIPLAA 407
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 511 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 413
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 633 PXVXPPXXPPPXAPPXXXP 689
           P   PP   PP APP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +2

Query: 827 PXPXPXXPXPXTXPXXPPRXKQXXPXAPPPG 919
           P P P           PP   Q  P   PPG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 12/37 (32%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
 Frame = +1

Query: 826 PXTPPXPXXPXNXPXX--PPPXKTXXPPXPPPXXPXS 930
           P   P P      P    PP      PP  PP  P S
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 809 GXXXTPPXPXPXXPXP 856
           G   TPP P P  P P
Sbjct: 333 GDSDTPPKPAPPPPPP 348


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 490 SHVLSCVIPLILWITVLPPLSELIPL 413
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,294
Number of Sequences: 438
Number of extensions: 7917
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)