Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J11
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    33   0.005
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    33   0.005
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.045
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.73 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 159 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 254
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.005
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 159 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 254
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.045
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 186 MSVIAHVDHGKSTLTDSL 239
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 183 NMSVIAHVDHGKSTLTDSL 239
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 164 VHHPTDLVYREIHH 123
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 752  PXPPPPXPR 778
            P PPPP PR
Sbjct: 1857 PEPPPPPPR 1865


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 549 VHTHQTHSQQPQGLHQ 502
           +HT   H Q  QG HQ
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,158
Number of Sequences: 438
Number of extensions: 6681
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)