Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J10
         (1027 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   5.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   8.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 997 GGXSGAGXXGXXGGGGG 947
           GG  G G  G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = +3

Query: 561 PPPXXCGPXXAVXRA-PPTXPXGPXXXAPPXPXGFAXPPCPXXPP 692
           P P  C P   + +  PP    GP     P P G    P P  PP
Sbjct: 45  PDPGSCDPSVGLRQGIPPHHYGGPPSGGQP-PQGM---PYPRFPP 85


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 1003 GGGGXSGAGXXGXXGG 956
            GGGG SG+G     GG
Sbjct: 524  GGGGGSGSGNNQPPGG 539


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 951  PPPPXXPXXPAPEXPPPPPXXP 1016
            PP P  P  P P   PP    P
Sbjct: 175  PPLPQVPPLPLPPIFPPTMINP 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,680
Number of Sequences: 336
Number of extensions: 2803
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29176451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)