Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J10
         (1027 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 969  PXXPAPEXPPPPP 1007
            P   +PE PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
 Frame = +3

Query: 627 PXXXAP-PXPXGFAXPPCPXX--PPXLXGPPXPXXPPPXPXAXPPPXXVXPP 773
           P   AP P P     P  P    PP     P P  PP  P +  P   +  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 907  PAXPGXPRXPXXXAPPPPPXXPXXLLPXXPP-PPPXXRP 1020
            P+    P+ P   +PP P   P    P  PP  PP   P
Sbjct: 25   PSPHQSPQAPQRGSPPNPSQGPP---PGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +3

Query: 645 PXPXGFAXPPCPXXPPXLXGPPXPXXPPPXPXAXPPPXXVXP 770
           P   G   PP P        PP P  P   P     P    P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 705 PPXPXXPPPXPXAXPP 752
           PP P  PPP P +  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 978  PAPEXPPPPP 1007
            P P  PPPPP
Sbjct: 339  PKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 1006 GGGGGXSGAGXXGXXGG 956
            GGGG  +G G  G  GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 1006 GGGGGXSGAGXXGXXGG 956
            GGGG  +G G  G  GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 895 LSSPPAXPGXPR 930
           LSSPP  PG PR
Sbjct: 135 LSSPPREPGTPR 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,268
Number of Sequences: 438
Number of extensions: 7628
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)