Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J09
         (942 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   8.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   8.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   8.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 917 PPPPPXPR 940
           PPPPP PR
Sbjct: 731 PPPPPPPR 738


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/30 (30%), Positives = 11/30 (36%)
 Frame = +3

Query: 798 PRAVXXXPPPXXXPPPXDXXXPXPPXPPXP 887
           P++    PPP    PP       P   P P
Sbjct: 273 PKSASLSPPPHVYNPPDHIQQATPYSAPGP 302


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 RHHRPW*LGHYHHF 491
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 RHHRPW*LGHYHHF 491
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 450 RHHRPW*LGHYHHF 491
           RHH     GH HHF
Sbjct: 117 RHHEEVADGHQHHF 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,312
Number of Sequences: 336
Number of extensions: 3411
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26478848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)