Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J08
         (968 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9G831 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    69   2e-10

>UniRef50_Q9G831 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=16; Ditrysia|Rep: NADH-ubiquinone oxidoreductase chain
           2 - Bombyx mori (Silk moth)
          Length = 340

 Score = 68.9 bits (161), Expect = 2e-10
 Identities = 49/163 (30%), Positives = 52/163 (31%)
 Frame = -3

Query: 615 KXWXFXPXKXLGGKIFXXXXGXNXGGXXFXXXXKKXXKKXXXFFLKKKXFXNXFFXXKKN 436
           K   F     LG  IF      N     F             FFL    F N  F    N
Sbjct: 177 KLLAFSSINNLGWMIFSIMISENLWLFYFLIYSMMIFMMISLFFLMNMYFMNQLFINNMN 236

Query: 435 FFXKXNXXXNFXFLGGXPPXXGFXPXGIXXXXXXXXXFXFLXFXFXKXXXIFFFFXXGXX 256
           FF K N   NF  LGG PP  GF P  I         F FL F F     I  ++     
Sbjct: 237 FFIKLNLLINFLSLGGLPPFMGFMPKWIIINFLLINKFYFLTFIFMMTSLIIIYYYIRII 296

Query: 255 XXPXXFNFFKXKGXXFXXKKKXXLIXFXPXFXISXKXLXXFXF 127
                FN+FK K      K    LI       IS   L  F F
Sbjct: 297 YSSFMFNYFKMKWVNLLMKNNMSLINLSSFISISSMILSTFIF 339


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,179,791
Number of Sequences: 1657284
Number of extensions: 2982754
Number of successful extensions: 3492
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 90223543267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)