Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_J07
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.018
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.032
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.056
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.13
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.17
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 4.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 8.4
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 8.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.006
Identities = 28/105 (26%), Positives = 31/105 (29%), Gaps = 1/105 (0%)
Frame = +2
Query: 476 GXPXLQKXGPXRGEXGSXFGXPXXXPXPXTXXPRXXXGGAXXPXXPKGGXXGXPPXPGXX 655
G P + K + G P P P P + P PK G PP P
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPV-PKPSVAAPPVPAPSSGIPPVPKPAA-GVPPVPPPS 1195
Query: 656 RRXP-PXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPP 787
P P P G P P P P PP P P P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 29.1 bits (62), Expect = 0.90
Identities = 23/80 (28%), Positives = 23/80 (28%), Gaps = 1/80 (1%)
Frame = +2
Query: 551 PXPXTXXPRXXXGGAXXPXXPKGGXXGXPPXPGXXRRXPPXP-PXGPPXAPHPXXXPAXG 727
P P P G P PK PP P PP P P G P P P
Sbjct: 1077 PAPSGAPPVPAPSGI--PPVPKPSVAA-PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 728 XXXPXXPPPPXXXXXXPXPP 787
PP P P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVP 1153
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/99 (24%), Positives = 27/99 (27%)
Frame = +3
Query: 600 PXPXXRAXPXVXPXXRGXPAGXHLXPXXAPXXPXTPXXGRPXAXXXPXGPPPRXPXXXXP 779
P P + P V G P+ P + P P P G PP P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP-VPKPSVA 1100
Query: 780 XPPGGXPXXLXXXXXXXPGPPXPPXXXSXEGLPPXXPXG 896
PP P G P P S P P G
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAP-PVPKPSVAAPPVPVPSG 1138
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/84 (26%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Frame = +2
Query: 539 PXXXPXPXTXXPRXXXGGAXXPXXPKGGXXGXPPXPGXXRRXPPXPPXG--PPXAPHPXX 712
P P P + P A P G PP P PP P P P P
Sbjct: 1063 PPPVPAPSSEIPSIP---APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 713 XPAXGXXXPXXPPPPXXXXXXPXP 784
P PP P P P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/84 (26%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Frame = +2
Query: 602 PXXPKGGXXGXPPXPGXXRRXP-PXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXP 778
P PK PP P P P P P P P P PP P P
Sbjct: 1102 PPVPKPSV-AVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Query: 779 XP-PGXXPXXLXXXXXRXPRXPXP 847
P P + P P P
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 27.5 bits (58), Expect = 2.8
Identities = 27/107 (25%), Positives = 27/107 (25%), Gaps = 2/107 (1%)
Frame = +2
Query: 551 PXPXTXXPRXXXGGAXXPXXPKGGXXGXPPXPGXXRRXPPXP-PXG-PPXAPHPXXXPAX 724
P P P P P G PP P PP P P G PP P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVP--APSGAPPVPKPSVAAPPVPVPSGAPP-VPKPSVAAPP 1151
Query: 725 GXXXPXXPPPPXXXXXXPXPPGXXPXXLXXXXXRXPRXPXPPXXXLP 865
PP P P P P PP P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/56 (28%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = +2
Query: 635 PPXPGXXRRXPPXPPXGPPXAPHPXXXPAXGXXXPXXPPP-PXXXXXXPXPPGXXP 799
PP P + PP P P P A P PP P P P P
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/87 (22%), Positives = 21/87 (24%)
Frame = +2
Query: 539 PXXXPXPXTXXPRXXXGGAXXPXXPKGGXXGXPPXPGXXRRXPPXPPXGPPXAPHPXXXP 718
P P P+ G P P P P P G P P P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP---- 1097
Query: 719 AXGXXXPXXPPPPXXXXXXPXPPGXXP 799
P P P P P G P
Sbjct: 1098 --SVAAPPVPKPSVAVPPVPAPSGAPP 1122
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.018
Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +2
Query: 602 PXXPKGGXXGXPPX-PGXXRRXPPXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXP 778
P P PP P PP PP P P P PA P P PP P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Query: 779 XPP 787
P
Sbjct: 485 AAP 487
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = +1
Query: 601 PXPPXGRXXXXPPXXGGXPPGXTLXPXGPPXGPXPXXXAGXGRRXXPXAPPPGXXXXXPP 780
P PP R P G +L PP P P A P PP G PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSL----PPPPPPPRSNAAGS---IP-LPPQGRSAPPPP 364
Query: 781 PPR 789
PPR
Sbjct: 365 PPR 367
Score = 29.9 bits (64), Expect = 0.52
Identities = 20/67 (29%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Frame = +2
Query: 602 PXXPKGGXXGXPPXPGXXRRXPPXPPXGPPXAPH-----PXXXPAXGXXXPXXPPPPXXX 766
P P+ G P P R PP PP P AP P + P PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPP--PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 767 XXXPXPP 787
P P
Sbjct: 398 RSAPALP 404
Score = 29.9 bits (64), Expect = 0.52
Identities = 26/91 (28%), Positives = 28/91 (30%)
Frame = +3
Query: 618 AXPXVXPXXRGXPAGXHLXPXXAPXXPXTPXXGRPXAXXXPXGPPPRXPXXXXPXPPGGX 797
A P P R PA L P TP P + P PP P P P G
Sbjct: 390 APPPAIPG-RSAPA---LPPLGNASRTSTPPVPTPPSL--PPSAPPSLPPSAPPSLPMGA 443
Query: 798 PXXLXXXXXXXPGPPXPPXXXSXEGLPPXXP 890
P PP P + LPP P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 29.5 bits (63), Expect = 0.68
Identities = 20/68 (29%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Frame = +2
Query: 602 PXXPKGGXXGXPPX--PGXXRRXPPXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXX 775
P P PP P P PP PP AP PA P PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPL-PPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 776 PXPPGXXP 799
P P P
Sbjct: 480 PAPAPAAP 487
Score = 29.1 bits (62), Expect = 0.90
Identities = 31/126 (24%), Positives = 33/126 (26%), Gaps = 10/126 (7%)
Frame = +2
Query: 503 PXRGEXGSXFGXPXXXPXPXTXX----PRXXXGGAXXPXXP--KGGXXGXPPXPGXXRRX 664
P G S P P P + P G + P P G P P R
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 665 ---PPXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXP-XPPGXXPXXLXXXXXRXP 832
PP PP P P P PP P P PP P P
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 833 RXPXPP 850
P P
Sbjct: 445 AAPPLP 450
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/64 (28%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Frame = +2
Query: 602 PXXPKGGXXGXPPXPGXXRRXPPXPPXGPP--XAPHPXXXPAXGXXXPXXPPPPXXXXXX 775
P P G PP PP PP A P G P PPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 776 PXPP 787
PP
Sbjct: 374 RQPP 377
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +3
Query: 549 PXXPGXXXXXXXXGGPGPXPXXRAXPXVXPXXRGXPAGXHLXPXXAPXXPXTP 707
P P G P P + P P G PA L P AP P P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL-PPAAPAPPPAP 480
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = +1
Query: 607 PPXGRXXXXPPXXGGXPPGXTLXPXGPPXGPX-PXXXAGXGRRXXPXAPPPGXXXXXPPP 783
PP P P G P PP P P AG P APP PPP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM-----PAAPPLPPAAPAPPP 478
Query: 784 PRXXXP 801
P
Sbjct: 479 APAPAP 484
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 665 PPXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPPGXXP 799
PP PP P P P P+ P P PP PP P
Sbjct: 230 PPIPPSIPSSRP-PERVPSLSAPAP-PPIPPPSNGTVSSPPNSPP 272
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.032
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = +2
Query: 590 GAXXPXXPKGGXXGXPPXPGXXRRXPPXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXX 769
G P P P + P PP P P P P P PPPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 770 XXPXPP 787
P P
Sbjct: 1739 SAPSVP 1744
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +3
Query: 684 APXXPXTPXXGRPXAXXXPX--GPPPRXPXXXXPXPPGGXPXXLXXXXXXXPGPPXP 848
AP P + RP + P P P P P PP P + P PP P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP--MPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/67 (26%), Positives = 19/67 (28%)
Frame = +2
Query: 665 PPXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPPGXXPXXLXXXXXRXPRXPX 844
P P PP P P P PPPP P PP P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTP--PPPPMSV---PPPPSAPPMPAGPPSAPPPPLPA 1737
Query: 845 PPXXXLP 865
+P
Sbjct: 1738 SSAPSVP 1744
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.056
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +2
Query: 602 PXXPKGGXXGXPPXPGXXRRXPPXPPXGPPXAPHPXXXPAXGXXXPXXPPPP 757
P P P P PP P G P P P A P PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 33.1 bits (72), Expect = 0.056
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 747 PPPRXPXXXXPXP-PGGXPXXLXXXXXXXPGPPXPPXXXSXEGLPPXXP 890
PPP P P P P P P PP PP + G PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +2
Query: 674 PPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPPGXXP 799
P P P P P G P PPP P PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/67 (31%), Positives = 22/67 (32%)
Frame = +2
Query: 674 PPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPPGXXPXXLXXXXXRXPRXPXPPX 853
PP PP P PA P PPP P PP P P P PP
Sbjct: 732 PPPPPPAVIVPTPAPA-----PIPVPPPAPIMGGPPPPPPPPGVAGAG---PPPPPPPPP 783
Query: 854 XXLPGGA 874
GG+
Sbjct: 784 AVSAGGS 790
Score = 29.5 bits (63), Expect = 0.68
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +1
Query: 655 PPGXTLXPXGPPXGPXPXXXAGXGRRXXPXAPPPGXXXXXPPPPRXXXP 801
PP + P P P G P PPPG PPPP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGG-PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 602 PXXPKGGXXGXPPXPGXXRRXPPXPPXGPPXA 697
P GG PP PG PP PP PP A
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP-PPPPA 784
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 601 PXPPXGRXXXXPPXXGGXPPGXTLXPXGPPXGPXPXXXAGXGRRXXP 741
P PP PP PPG PP P P AG R P
Sbjct: 750 PVPPPAPIMGGPPPPP-PPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = +3
Query: 696 PXTPXXGRPXAXXXPXGPPPRXPXXXXPXPPGGXPXXLXXXXXXXPGPPXPPXXXSXEG 872
P P P P PP P P PP P P PP PP S G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP---PPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Frame = +2
Query: 593 AXXPXXPKGGXXG----XPPXPGXXRRXPPXPPXGPP 691
A P P G PP PG PP PP PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 4/81 (4%)
Frame = +2
Query: 635 PPXPGXXRRXP----PXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPPGXXPX 802
PP P R P P P PP P+ P PPP P P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 803 XLXXXXXRXPRXPXPPXXXLP 865
P+ P PP P
Sbjct: 190 LPSAVPPMPPKVPPPPLSQAP 210
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = -1
Query: 787 GGXGXXXXGXRGGGPXGXXXAXGRPXXGVXGXXGAXXGXRWXPAGXPRXXGXTXGXALXX 608
GG G G G G G G G G G G P G G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 607 GXGPG 593
G GPG
Sbjct: 255 GGGPG 259
Score = 30.7 bits (66), Expect = 0.30
Identities = 22/76 (28%), Positives = 22/76 (28%)
Frame = -1
Query: 850 GGXGGPGXXXXXXXKXXGXPPGGXGXXXXGXRGGGPXGXXXAXGRPXXGVXGXXGAXXGX 671
GG GGP G G G GGGP G G G G G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 670 RWXPAGXPRXXGXTXG 623
P G G G
Sbjct: 255 GGGPGGFGGGPGGHGG 270
Score = 30.7 bits (66), Expect = 0.30
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = -1
Query: 889 GXXGGSPSXEXXXGGXGGPGXXXXXXXKXXGXPPGGXGXXXXGXRGGGPXGXXXAXG 719
G GG GG GG G PGG G G GGGP G G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF-GGGPGGFGGGPG 266
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/69 (28%), Positives = 20/69 (28%)
Frame = -1
Query: 799 GXPPGGXGXXXXGXRGGGPXGXXXAXGRPXXGVXGXXGAXXGXRWXPAGXPRXXGXTXGX 620
G PP G G GG G G G G G P G G G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 619 ALXXGXGPG 593
G GPG
Sbjct: 258 PGGFGGGPG 266
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +2
Query: 665 PPXPPXGPPXAPHPXXXPAXGXXXPXXPPPP 757
PP P P HP P P PP P
Sbjct: 731 PPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 635 PPXPGXXRRXPPXPPXGPPXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPPGXXPXXLXX 814
P PG PP PP P P A G PP PPG +
Sbjct: 484 PFIPGTSAPLPPTT-FAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPG-----MPA 537
Query: 815 XXXRXPRXPXPPXXXLPGGASXXGSXG 895
P P P +PG + G+ G
Sbjct: 538 PFPGYPAVPAMP--GIPGATAPPGAPG 562
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 674 PPXGPPXAPHPXXXPAXGXXXPXXPPPP 757
PP PP P P G P PPPP
Sbjct: 5 PPGNPPPPP-----PPPGFEPPSQPPPP 27
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/64 (28%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Frame = +2
Query: 665 PPXPPXGP--PXAPHPXXXPAXGXXXPXXPPPPXXXXXXPXPPGXXPXXLXXXXXRXPRX 838
PP P P P P P P P P PP P P P
Sbjct: 577 PPVAPVAPEVPSVPQPPVAPVV-PEAPSVPQPP-VAPVAPEVPSVPQRPAVPVVPEAPSV 634
Query: 839 PXPP 850
P PP
Sbjct: 635 PQPP 638
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 682 GPPXGPXPXXXAGXGRRXXPXAPPP--GXXXXXPPP 783
G P G P AG R APPP G PPP
Sbjct: 107 GIPLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,112
Number of Sequences: 5004
Number of extensions: 23922
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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