Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J05
         (956 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            31   1.0  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               31   1.8  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              29   7.4  

>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = -3

Query: 588 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 409
           S + P+SG+  P      PP+   VF S S  P PV   P  PP  +F   A S+ +   
Sbjct: 424 SVFAPSSGV--PTPVAAPPPS---VFASSSGVPTPVTAPPPAPPPSVF---APSSGVPTP 475

Query: 408 SRRPP*FVLSPCRS-QDPGAVGLPGQFA 328
              PP  V +P      P A   P  FA
Sbjct: 476 VAAPPPSVFAPSSGVPTPVAAPPPSVFA 503



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -3

Query: 588 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 409
           S +  +SG+  P   +  PP+   VF S S  P PVA  P  PP  +F   A S+ +   
Sbjct: 366 SVFASSSGV--PTPVKAPPPS---VFASSSGVPTPVAAPPPAPPPSVF---APSSGVPTP 417

Query: 408 SRRPP*FVLSPCRS-QDPGAVGLPGQFAA 325
              PP  V +P      P A   P  FA+
Sbjct: 418 VAAPPPSVFAPSSGVPTPVAAPPPSVFAS 446



 Score = 28.3 bits (60), Expect = 9.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 588 SAWTPTSGLL*PNSFETIPPAER-RVFLSRSHTPEPVAVIPDLPPICLFISIAA 430
           S + P+SG+  P      PPA    VF   S  P PV   P  PP  +F   +A
Sbjct: 522 SVFAPSSGV--PTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSA 573


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +2

Query: 341 GRPTAPGSWDLQGDSTNYGGRLDWANKNAEAAIDINRQIGGRSGMTATGSGVWDLDKNTR 520
           GR T+P SWD + D + + G L   + N   A       G  SG+++  S  +     + 
Sbjct: 383 GRTTSP-SWDYRPDMSPFHGTLTSPSGNVYVATTDEFTSGHASGLSSAASSGFTSAPGSE 441

Query: 521 LSAGGMV 541
            S GG +
Sbjct: 442 TSDGGFI 448


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +1

Query: 229 QVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 354
           Q G G  FGT      GLFG AG N        G +TG  +G
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 221  QVTSRGCRFEKCPLIGYPSSYSQ*TSALTHTRT 123
            ++T  GC FE  P + +P+SY      +  T+T
Sbjct: 2867 ELTKEGCVFETAPAVSHPASYVDEDGRVWATKT 2899


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,029,891
Number of Sequences: 59808
Number of extensions: 544428
Number of successful extensions: 1350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2812459436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)