Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J05
         (956 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    29   4.6  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    29   4.6  
At3g32150.1 68416.m04094 hypothetical protein                          29   4.6  
At4g15150.1 68417.m02326 glycine-rich protein                          29   6.0  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +1

Query: 13  IDSTHYGNSLRF-*HSCLKQRNLSQVKMNSKL-------LYFFATVLVCVNAEVYWEY 162
           ++ THYGN  RF  H CL   NL ++ ++++        L FF T  +    E+ W+Y
Sbjct: 645 LEGTHYGNISRFINHRCL-DANLIEIPVHAETTDSHYYHLAFFTTREIDAMEELTWDY 701


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +1

Query: 13  IDSTHYGNSLRF-*HSCLKQRNLSQVKMNSKL-------LYFFATVLVCVNAEVYWEY 162
           ++ THYGN  RF  H CL   NL ++ ++++        L FF T  +    E+ W+Y
Sbjct: 622 LEGTHYGNISRFINHRCL-DANLIEIPVHAETTDSHYYHLAFFTTREIDAMEELTWDY 678


>At3g32150.1 68416.m04094 hypothetical protein
          Length = 241

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 531 PAERRVFLSRSHTPEPVAVIPDLPP 457
           P E  + ++   TPEPV + P++PP
Sbjct: 162 PVEPEISVTSVETPEPVVIPPEVPP 186


>At4g15150.1 68417.m02326 glycine-rich protein 
          Length = 102

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 446 NRQIGGRSGMTATGSGVWDLDKNTRLSAGGMVSKEFG 556
           N  +GGR  +T TG GV  +    +    G+  K FG
Sbjct: 64  NSGVGGRGRLTGTGFGVTGIGLGRKAFGEGLKGKTFG 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,286,294
Number of Sequences: 28952
Number of extensions: 376672
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2304931176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)