Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J04
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    30   0.41 
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   5.1  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   6.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.7  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 428 TVTQGTCGFCTLEGNCLFQRFLRFNPKPIYIDMGNRYRRHASE 556
           T T   C  CTL G C+  R  R  P   ++D+  +   HASE
Sbjct: 103 TPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASE 145


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -2

Query: 377 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGARGTLS 243
           S + SLFS       R   RF        F G++GW  +LG+    S
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFS 393


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 174 ANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYRRPSD 284
           A+    N+ S+ ++   A A+SR +CS C K ++  D
Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCD 353


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 483  WNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM*MFNGRLVIFWI 349
            W +     + K  +P V++A     KSN N +  ++ G   + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,587
Number of Sequences: 5004
Number of extensions: 57392
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)