Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_J04
(942 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 32 0.59
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09) 32 0.59
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31) 31 1.4
SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31) 31 1.4
SB_36576| Best HMM Match : FerB (HMM E-Value=9) 30 3.1
SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 29 7.2
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0) 28 9.5
SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 32.3 bits (70), Expect = 0.59
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 244 DNVPRAPSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDIGL 408
+ + RA ADH I + K+D QLD N +Y++ + NP+ + ++ V
Sbjct: 253 EEIERAKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTA 312
Query: 409 DQPIESHR 432
+ +ESHR
Sbjct: 313 ENLVESHR 320
>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
Length = 1487
Score = 32.3 bits (70), Expect = 0.59
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 244 DNVPRAPSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDIGL 408
+ + RA ADH I + K+D QLD N +Y++ + NP+ + ++ V
Sbjct: 229 EEIERAKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTA 288
Query: 409 DQPIESHR 432
+ +ESHR
Sbjct: 289 ENLVESHR 296
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 31.1 bits (67), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 246 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQC 344
QCS+C+K S S + R + KP +CS C
Sbjct: 762 QCSTCSKSYSTSRSLVRHERSHSSEKPYLCSDC 794
>SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
Length = 147
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 246 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 359
QC+ C KY R S S ++R + KP C +C + K
Sbjct: 6 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 246 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 359
QC+ C KY R S S ++R + KP C +C + K
Sbjct: 62 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99
>SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
Length = 147
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 246 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 359
QC+ C KY R S S ++R + KP C +C + K
Sbjct: 6 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 246 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 359
QC+ C KY R S S ++R + KP C +C + K
Sbjct: 62 QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99
>SB_36576| Best HMM Match : FerB (HMM E-Value=9)
Length = 223
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 315 ELHVVDFRRKNRMVCGTWRTRNIVTLIQP*RFLASLSHCTCYRALCWRW 169
ELH+ FRR+NRM R+I++ F +CT Y+ +CW++
Sbjct: 64 ELHM--FRRENRMAGKQLPARDILS------FENKRRNCTVYKCVCWQY 104
>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 29.5 bits (63), Expect = 4.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 197 VQCDKLARNRYGCIKVTMFLVRQVPQTIRFFLRKSTTCSSIQ 322
++CDK+ R+ K TM + R +R + K+ T S++Q
Sbjct: 674 IKCDKIQTGRFVYPKNTMMIPRHFQVGLRIYAGKNETLSTLQ 715
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 28.7 bits (61), Expect = 7.2
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 293 RKSTTCSSIQTEGMFAVSPIQKITRRPLN--IH-IIQLILDLTSRSRATVTQGTCGFCTL 463
RK++T SS + A P Q + P + +H I+ L+L LTS + T++QG+ + +
Sbjct: 297 RKASTASSHSSSFRLAKKP-QHVCSNPPSCLLHSIVALLLCLTSDGQLTLSQGSANWSSA 355
Query: 464 EGNC 475
+C
Sbjct: 356 LQSC 359
>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
Length = 1227
Score = 28.3 bits (60), Expect = 9.5
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 206 DKLARNRYGCIKVTMFLVRQVPQTIRFFLRKSTT------CSSIQTEGMFAVSPIQKI 361
D ++R+R C+ V + ++ Q+ L + T C+S+ G+ AVS I KI
Sbjct: 890 DPVSRDRRSCLPVHLCILSQLYDAFSVLLDSTETAYLSVGCASVMCLGLCAVSAIMKI 947
>SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.3 bits (60), Expect = 9.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 299 STTCSSIQTEGMFAVSPIQK 358
STTCS++ T G +A++P +K
Sbjct: 89 STTCSAVTTVGGYAITPFRK 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,412,803
Number of Sequences: 59808
Number of extensions: 472794
Number of successful extensions: 1415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -