Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J04
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation fact...    29   6.4  
U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation fact...    29   6.4  
U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation fact...    29   6.4  
U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation fact...    29   6.4  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    29   6.4  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    29   6.4  

>U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1B isoform protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 343 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 209
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1A isoform protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 343 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 209
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform a protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 343 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 209
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform b protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 343 HCEHTFGLDRAARRRFSKEESDGLRYLAHEEHCHLDTAIAVPGQL 209
           H EH   +D+  +R+   + S  L   +H E C     I V  QL
Sbjct: 353 HVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = +2

Query: 317 IQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLFQR-FL 493
           I TE +  V  IQK   +P+ +     +  L S+    +  G    C+  G CLF++ F 
Sbjct: 271 ISTESI--VKFIQK--GKPMQVQAQNGVFSLPSQQHQPIPMGIPSTCSTPGGCLFEKDFC 326

Query: 494 RFNPKPIYIDMGNRYRRHASEDXEELRPYNE 586
            +   P   +  +  + H S   E + P  E
Sbjct: 327 GWTTPPGVTNKFHLKKVHMSSFSEAIVPVGE 357


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = +2

Query: 317 IQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLFQR-FL 493
           I TE +  V  IQK   +P+ +     +  L S+    +  G    C+  G CLF++ F 
Sbjct: 379 ISTESI--VKFIQK--GKPMQVQAQNGVFSLPSQQHQPIPMGIPSTCSTPGGCLFEKDFC 434

Query: 494 RFNPKPIYIDMGNRYRRHASEDXEELRPYNE 586
            +   P   +  +  + H S   E + P  E
Sbjct: 435 GWTTPPGVTNKFHLKKVHMSSFSEAIVPVGE 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,165,996
Number of Sequences: 27780
Number of extensions: 360688
Number of successful extensions: 1146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)