Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J04
         (942 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   1.5  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    29   3.4  
At5g48385.1 68418.m05980 expressed protein                             29   5.9  

>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 226 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDI 402
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 403 GLDQPIESHRNTR 441
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 314 SIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLF--QR 487
           S+Q     AVS +++ T   + +H    I+ L   S  +  +G C     E +C      
Sbjct: 596 SLQKRSKRAVSLVERFTEEEIKLH----IMSLKKPSTQSAVEGMCDLKEEEESCQLCDDG 651

Query: 488 FLRFNPKPIY 517
            L F P+P+Y
Sbjct: 652 TLLFPPQPLY 661


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 466 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 290
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 289 EESDGLRY 266
            E     Y
Sbjct: 61  LEDQEKEY 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,196,009
Number of Sequences: 28952
Number of extensions: 342080
Number of successful extensions: 1108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)