Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J03
         (925 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    143   8e-36
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    26   1.9  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   7.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   7.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   7.5  
AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase ...    23   9.9  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  143 bits (346), Expect = 8e-36
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +2

Query: 86  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 265
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 266 IQKESTLHLV 295
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score =  143 bits (346), Expect = 8e-36
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +2

Query: 86  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 265
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 266 IQKESTLHLV 295
           IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146



 Score =  143 bits (346), Expect = 8e-36
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +2

Query: 86  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 265
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 266 IQKESTLHLV 295
           IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 76  ESEDANFRKDPHGQDHH 126
           ESE  N RK PH QD H
Sbjct: 50  ESEGGNLRKYPHFQDIH 66


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 568 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 482
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 568 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 482
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +2

Query: 50  PCGMVDSVRRVKMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 226
           P G    VR  K    V+T  G  ++   V   +    + A +  K   P  Q R IF G
Sbjct: 545 PLGQYIEVRNKKWSGIVETALGGCLSAFFVSTQEDWRTLDALL--KREFPDLQNRTIFTG 602

Query: 227 KQLEDGRTLSDYNIQKESTLHLV 295
           + +++   +    +Q++   HL+
Sbjct: 603 RFVKELYDVRSGCVQEQDGTHLL 625


>AJ439060-7|CAD27758.1|  849|Anopheles gambiae putative V-ATPase
           protein.
          Length = 849

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 589 VESVSYRLEGTYLFVVVFEDHRAVTLPAVVTVL 491
           V+ V  RLE   + +   +DHRA+ L +V   L
Sbjct: 261 VKGVCTRLEDLRMVLNQTQDHRAIVLASVAKEL 293


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,817
Number of Sequences: 2352
Number of extensions: 12572
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100468593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)