Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J01
         (884 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    74   6e-12
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    62   1e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    44   0.004
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    43   0.009
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.048
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.084
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    34   4.2  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   5.5  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 73.7 bits (173), Expect = 6e-12
 Identities = 50/108 (46%), Positives = 54/108 (50%)
 Frame = +3

Query: 315 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTXRR*YGYPQNQGITQERTCEQKASKRP 494
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76

Query: 495 GTVKRPRCWRFSIGSAPLNEHHKXXXXXXXXXXXXDYKDTRRFPWXLP 638
               RPR  RFSIGSAPL    K            DYKD RRFP   P
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAP 121


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 62.5 bits (145), Expect = 1e-08
 Identities = 29/38 (76%), Positives = 29/38 (76%)
 Frame = -1

Query: 491 PFAGLLLTCSFLRYPLILWITVLPPXSELIPLAAAERP 378
           P    LLTCSF  YPLILWITVLPP SEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 291 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TXRR*YGYPQNQGITQ 458
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 94  DPDMIRYIDEFGQTTTRMQ 150
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 30/75 (40%), Positives = 32/75 (42%)
 Frame = +3

Query: 483 SKRPGTVKRPRCWRFSIGSAPLNEHHKXXXXXXXXXXXXDYKDTRRFPWXLPLXSPVPTL 662
           SK+  T    R  RFSIGSAPL    K            DYKDTRRFP   P  S     
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAP--SCALLF 59

Query: 663 XXYRIPVRLSPFXXR 707
              R+P    PF  R
Sbjct: 60  RPCRLPDTCPPFSLR 74



 Score = 40.3 bits (90), Expect = 0.064
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +2

Query: 620 FPLEXPSALSCSDPXXLPDTCPPFXLXEXXXF 715
           FPLE PS      P  LPDTCPPF L E   F
Sbjct: 48  FPLEAPSCALLFRPCRLPDTCPPFSLREAWRF 79


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 23/46 (50%), Positives = 24/46 (52%)
 Frame = +3

Query: 501 VKRPRCWRFSIGSAPLNEHHKXXXXXXXXXXXXDYKDTRRFPWXLP 638
           V+ PR  RFSIGSAPL    K            DYKDTRRFP   P
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAP 89


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.048
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 289 SALMNRPTRGERRFAYW 339
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.084
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 361 ERGSGRAPNTQTASPRALADSLMQ 290
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 425 IRLSTESGDNAGKNM 469
           IRLSTESGDNAGKNM
Sbjct: 45  IRLSTESGDNAGKNM 59


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 172 EICDAIALFVTIISCNKQVNNNXCXHFMFQVXXXVWEVFSALMNRPTRGERRFAYW 339
           +  DA   F+ I   N  +N++ C   + +V   VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,080,144
Number of Sequences: 1657284
Number of extensions: 11147114
Number of successful extensions: 29275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28835
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)