Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J01
         (884 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   3.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    28   9.5  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    28   9.5  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   9.5  

>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 768 GCXPXXXXPXPPXXXXXXPXPPXXPP 845
           GC P    P PP      P PP  PP
Sbjct: 373 GCSPPSPPPPPPPPPPPPPPPPPPPP 398


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 348  PLPRSLTRCARSFGCGERYQLTXRR 422
            P PRS  RCA S GC  R Q+   R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 348  PLPRSLTRCARSFGCGERYQLTXRR 422
            P PRS  RCA S GC  R Q+   R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 339 PIRKPPLPARWPIH*CRKNLP 277
           P   PP P R P H CRKN P
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDP 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,628
Number of Sequences: 28952
Number of extensions: 255971
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)