Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I24
         (964 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   5.4  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 118 NHN*KVMLKEPCIVL*ICDICVQYY 192
           +H  KV+ K P I    C+I V+Y+
Sbjct: 128 HHTGKVVWKPPAIYKSFCEIDVEYF 152


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 290 YDYLFKVVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVE 409
           ++Y+ KV+ I  S     +LL RF     NLE    I V+
Sbjct: 165 FNYM-KVIFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQ 203


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 881 PPXPXPXPXPPXPS 922
           PP P P P PP  S
Sbjct: 338 PPKPAPPPPPPSSS 351


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 173 IFVSNIIFIYGHLDVSKLTD--F*RRLQSSG*TKMGTREDEYDYL--FKVVLIGDSGVGK 340
           IF+  IIFIY +  ++++TD      LQS    ++   +DEYD +   K    GD  V K
Sbjct: 13  IFLILIIFIYSNETIAQVTDDENCETLQS----EVHITKDEYDEIGRLKRTCSGDISVTK 68


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 173 IFVSNIIFIYGHLDVSKLTD--F*RRLQSSG*TKMGTREDEYDYL--FKVVLIGDSGVGK 340
           IF+  IIFIY +  ++++TD      LQS    ++   +DEYD +   K    GD  V K
Sbjct: 13  IFLILIIFIYSNETIAQVTDDENCETLQS----EVHITKDEYDEIGRLKRTCSGDISVTK 68


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 851 PXXXPXRPPXPPXPXPXPXPPXPSTXXSHPXXPXPP 958
           P      PP P        PP P+   S P  P  P
Sbjct: 411 PSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 521 PRRGSTPT*WRGTAPGRP 468
           P+RGS P   +G  PG P
Sbjct: 34  PQRGSPPNPSQGPPPGGP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,710
Number of Sequences: 438
Number of extensions: 5965
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)