Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I23
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.006
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.56 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    28   2.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   2.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    27   4.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   9.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
 Frame = +3

Query: 819 SPPPXPPXHXRPAPPPXHXXXPXPXXFXXXTAPSXRPP---XXXPPPAXPNP 965
           SPPP PP    P P P     P P        P   PP      PPP  P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = +3

Query: 804 PXVXLSPPPXPPXHXRPAPPPXHXXXPXPXXFXXXTAPSXRPPXXXPPPA 953
           P   + P P P     P P P     P P       A +  PP   PPPA
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP-PPGVAGAGPPPPPPPPPA 784


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = +3

Query: 804  PXVXLSPPPXPPXHXRPAPPPXHXXXPXPXXFXXXTAPSXRPPXXXPPPAXPNP 965
            P   +S PP  P     APP      P P        PS  P    PP A P P
Sbjct: 1683 PAHPVSTPPVRPQSA--APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
 Frame = +3

Query: 834  PPXHXRPAPPPXHX-XXPXPXXFXXXTAPSXRPPXXXP---PPAXPNP 965
            PP    P PPP      P P        P   PP   P    P+ PNP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
 Frame = +3

Query: 825 PPXPPXHXRP-APPPXHXXXPXPXXFXXXTAPSXRPPXXX--PPPAXP 959
           PP P    RP    P     P P        PS  PP     PPPA P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = +3

Query: 798 SXPXVXLSPPPXPPXHXRPAPPPXHXXXPXPXXFXXXTAPSXRPPXXXPPPAXPNP 965
           S P +    PP P     PA P      P P      +A    PP   PPP    P
Sbjct: 156 SAPPIPSKAPPIPSSLPPPAQPAAPVKSP-PSAPSLPSAVPPMPPKVPPPPLSQAP 210



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/54 (29%), Positives = 18/54 (33%)
 Frame = +3

Query: 804 PXVXLSPPPXPPXHXRPAPPPXHXXXPXPXXFXXXTAPSXRPPXXXPPPAXPNP 965
           P   L PP   P   RP+ PP       P        PS  PP   P     +P
Sbjct: 133 PQSELRPPTSAPP--RPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 194 TVNEVRIDPCVNSRLCHLKKGXNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 355
           T   +   PC+++ L  +     A+   +FT   +TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -2

Query: 370  IVKSIKRNFSAILQPKEAGLELSCR--ELWCKVERNLRVXPFLEVAQSTVNTGVNSDLVH 197
            I+ ++K  F +I   K   L+ + R   LW K   N  V   L V  STVN  +  D++ 
Sbjct: 1684 IIPAVKGFFKSIALSK-GNLQDTLRLLNLWFKFGNNSNVINTLNVGISTVNIDIWLDVIP 1742

Query: 196  STRAGVH 176
               A +H
Sbjct: 1743 QLIARIH 1749


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
 Frame = +3

Query: 804  PXVXLSPPPXPPXHXRPAPPPXHXXXPXPXXFXXXTAPSXR---PPXXXPPPAXPNP 965
            P V   P P P     P P P     P P        P      PP   P  A P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 346 FSAILQPKEAGLELSCRELWCKVERNLRVXPFLEVAQSTVNTGVN 212
           F  +LQ K AG  +S  +LW +      V P    A +T ++  N
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 882  GXXCXXVGGRGAXGXGXXXGGKGXRQGW 799
            G      G +GA G G   GG G   GW
Sbjct: 1525 GLVAVEFGRKGALGIGARVGGLGQMPGW 1552


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -2

Query: 964 GFGXAGGGXXXGGRXLGAVXXXKXXGXGXXXXXGGGAGRXWXGGXGGGER 815
           GFG   GG   GGR  G     +    G     GG +G    GG  GG +
Sbjct: 27  GFGGGRGGARGGGR--GGARGGRGGRGGARGGRGGSSG--GRGGAKGGAK 72


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 882  GXXCXXVGGRGAXGXGXXXGGKGXRQGW 799
            G      G +GA G G   GG G   GW
Sbjct: 1529 GLVAVEFGRKGALGIGARVGGLGQMPGW 1556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,176
Number of Sequences: 5004
Number of extensions: 48807
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)