Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I21
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.7  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   6.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   8.6  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 175 QLYNSVVVADYDSAVEKSKHLYEEKKS 255
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 421 VHXLNRVFGEDKSELNWETIPDDV 350
           +H +     EDKS+L +ETIPD V
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPV 32


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 366 VSQLSSDLSSPKTRLSXCTSATV 434
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +2

Query: 647  PRPQFHRPXVPXPCXRTPXPLXPXXXRPHTRXSPRCXXLXAP-GPPXXPRXS 799
            P+P    P VP P    P    P    P  + S     +  P G P  P+ S
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPS 1146


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 339  GLQGTSSGIVSQLSSDLSSPKTRLSXCTSATV 434
            G++G  SG+V  ++  LSSP T +    S  V
Sbjct: 3547 GVEGLLSGLVMSIAQSLSSPTTDIKQYLSLYV 3578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,940
Number of Sequences: 5004
Number of extensions: 36574
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)