Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I21
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.20 
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    30   1.9  
At5g64820.1 68418.m08155 hypothetical protein                          28   9.9  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    28   9.9  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 73  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 252
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 253 SEVITNV 273
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +2

Query: 41   DLSSXLGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 214
            D+   LG    +T+Q    + +    +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1060 DIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At5g64820.1 68418.m08155 hypothetical protein 
          Length = 145

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 508 CLVLAVAVGRSAIVAXNIIAQRQSETVALVHXLNRVFGEDKSELNWETI 362
           C+++ +  G SA  A +  A ++ E  ++V  ++ +FG      +WE I
Sbjct: 15  CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +2

Query: 644 SPRPQFHRPXVPXPCXRTPXPLXPXXXRPHTRXSPRCXXL-XAPGP 778
           SP P  H P  P P    P P+     +P T   P    +  AP P
Sbjct: 794 SPPPPVHSPPPPSPIYSPPPPVFSPPPKPVTPLPPATSPMANAPTP 839


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,860
Number of Sequences: 28952
Number of extensions: 229127
Number of successful extensions: 1071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)