Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_I20
(957 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 42 1e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 40 7e-04
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.079
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.14
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 31 0.18
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 0.28
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.32
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 3.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/71 (35%), Positives = 27/71 (38%)
Frame = +3
Query: 654 PXXPXPPXXXXPPXAPPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXLXPXXXPTXPPF 833
P P PP PP APP PP SL + P P + P P P PP
Sbjct: 415 PPVPTPPSL--PPSAPPSLPPSAPPSL---PMGAPAAPPLPPSAPIAPPLPAGMPAAPPL 469
Query: 834 LPXLPXPXPRP 866
P P P P P
Sbjct: 470 PPAAPAPPPAP 480
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +2
Query: 620 IPXXFXXXPPPPX--PPXPPXPPXXPXRPP 703
+P PP P P PP PP P PP
Sbjct: 449 LPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = +3
Query: 633 SSXXPPXPXXPXPPXXXXPPXAPPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXLXPXX 812
S+ P P P P PP + P P S P PS+ PPP P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP-AQPAA 179
Query: 813 XPTXPPFLPXLPXPXP 860
PP P LP P
Sbjct: 180 PVKSPPSAPSLPSAVP 195
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.079
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -1
Query: 714 GGXWGGRXGXXGGXGGXGGXGGG 646
GG GGR G GG GG GG GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGG 34
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 714 GGXWGGRXGXXGGXGGXGGXGGG 646
GG GGR G G GG GG GG
Sbjct: 41 GGARGGRGGRGGARGGRGGSSGG 63
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 711 GXWGGRXGXXGGXGGXGGXGGG 646
G GGR G GG GG G GG
Sbjct: 45 GGRGGRGGARGGRGGSSGGRGG 66
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 865 GRGXGXGRXGRKGGXVGXXXGXRXGGGWAEG 773
GRG G G +GG G G G G A+G
Sbjct: 39 GRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Frame = +3
Query: 654 PXXPXPPXXXXPPXAPPXSPPXXXXSLXXXXXXXKS---XXPXPSAHPPPXLXPXXXPTX 824
P P P P AP +PP S+ S P PS PP P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 825 P-PFLPXLPXPXP 860
P P + P P P
Sbjct: 1162 PKPSVAAPPVPAP 1174
Score = 30.7 bits (66), Expect = 0.32
Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Frame = +3
Query: 654 PXXPXPPXXXXPPXAPPXSPPXXXXSLXXXXXXXKS----XXPXPSAHPPPXLXPXXXPT 821
P P P P AP +PP S+ S P P+A PP P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 822 XP-PFLPXLPXPXP 860
P P + P P P
Sbjct: 1200 VPKPSVGVPPVPPP 1213
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/75 (28%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Frame = +3
Query: 645 PPXPXXPXPPXXXXPPXA-PPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXLXPXXXPT 821
PP P P P A PP P P PS PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 822 XPPFLPXLPXPXPRP 866
PP P P P P
Sbjct: 1210 VPP--PSTAPPVPTP 1222
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/71 (23%), Positives = 19/71 (26%)
Frame = +3
Query: 648 PXPXXPXPPXXXXPPXAPPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXLXPXXXPTXP 827
P P PP PP PP + P +A P P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231
Query: 828 PFLPXLPXPXP 860
P P P P
Sbjct: 1232 PTAKAPPVPAP 1242
Score = 26.6 bits (56), Expect = 5.2
Identities = 20/83 (24%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Frame = +3
Query: 636 SXXPPXPXXPXPPXXXXPPXAPPX------SPPXXXXSLXXXXXXXKSXXPXPSAHPPPX 797
S P P PP APP +PP S S P P +
Sbjct: 1001 STSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAP 1060
Query: 798 LXPXXXPTXPPFLPXLPXPXPRP 866
P P +P +P P P
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAP 1083
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 31.5 bits (68), Expect = 0.18
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 280 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 173
AIA P +I+P ++RP S+F+KS A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +3
Query: 690 PXAPPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXLXPXXXPTXPPFLPXLPXP 854
P P +PP S + P P + PPP P P PP P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLP 1736
Score = 29.5 bits (63), Expect = 0.73
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 614 TXIPXXFXXXPPPPXPPXPPXPPXXPXRP 700
T P PPP PP P PP P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +3
Query: 648 PXPXXPXPPXXXXPPXAPPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXLXPXXXPTXP 827
P P P PP +PP S+ PSA PPP L P+ P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA-PPPPLPASSAPSVP 1744
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 645 PPXPXXPXPPXXXXPPXAPPXSPP 716
PP P PP P PP +PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 25.8 bits (54), Expect = 9.0
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Frame = +3
Query: 687 PPXAPPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXLXPXXXPTXPP--FLPXLPXPXP 860
PP P + P S S P PSA P P P P P P +P P
Sbjct: 1690 PPVRPQSAAPPQM-SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGD 1748
Query: 861 RPXL 872
R L
Sbjct: 1749 RSAL 1752
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect(2) = 0.28
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 614 TXIPXXFXXXPPPPXPPXPPXPP 682
T P P PP PP P PP
Sbjct: 226 TYTPKQADPLPAPPPPPPPTLPP 248
Score = 25.0 bits (52), Expect(2) = 0.61
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 614 TXIPXXFXXXPPPPXPP 664
T +P + PPPP PP
Sbjct: 181 TSLPSDYNPPPPPPPPP 197
Score = 23.4 bits (48), Expect(2) = 0.28
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 662 PXPPXPPXXPXRPP 703
P PP P P RPP
Sbjct: 273 PPPPATPSQPPRPP 286
Score = 23.0 bits (47), Expect(2) = 0.61
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 647 PPPXPPXPPXPPXXP 691
P P PP PP P P
Sbjct: 234 PLPAPPPPPPPTLPP 248
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.32
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 633 SSXXPPXPXXPXPPXXXXPPXAPPXSPP 716
+S P P P PP PP PP PP
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 616 TXTXXLXPXXPPXPPXPPP 672
T + P PP PP PPP
Sbjct: 935 TSVAGVMPAFPPPPPPPPP 953
Score = 23.0 bits (47), Expect(2) = 3.6
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +2
Query: 614 TXIPXXFXXXPPPPXPPXP 670
T +P PPP PP P
Sbjct: 896 TSLPTIITHPTPPPPPPLP 914
Score = 22.2 bits (45), Expect(2) = 3.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 650 PPXPPXPPXPP 682
P PP PP PP
Sbjct: 942 PAFPPPPPPPP 952
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = -1
Query: 702 GGRXGXXGGXGG-XGGXGG 649
GGR G GG GG GG GG
Sbjct: 138 GGRGGFRGGRGGSRGGFGG 156
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 883 PPXXPTPPPQXXTGXPFXPXXPP 951
P P PPP G P P PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +3
Query: 645 PPXPXXPXPPXXXXPP-XAPPXSPPXXXXSLXXXXXXXKSXXPXPSAHPPPXL 800
PP P PP PP A PP + P P A P P +
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKI 805
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,075
Number of Sequences: 5004
Number of extensions: 38723
Number of successful extensions: 324
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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