Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I20
         (957 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 636 SXXPPXPXXPXPPXXXXPPXAPPXSPP 716
           S   P    P  P    PP  PP +PP
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 768 PXPSAHPPPXLXPXXXPTXPP 830
           P PS  PPP   P   P+  P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 644 PPPPXPPXPPXPPXXP 691
           PP P PP PP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 215 EEFPPGLRSSADRAESQHQREDEAQNT 135
           +EFP    S  +R  S HQR   + NT
Sbjct: 102 KEFPNSSSSDDERPNSIHQRASFSLNT 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,504
Number of Sequences: 438
Number of extensions: 5107
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)