Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_I18
(961 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 226 1e-59
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 123 2e-28
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 122 5e-28
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 114 7e-26
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 109 2e-24
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 108 6e-24
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 107 8e-24
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 89 4e-18
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 88 7e-18
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 65 6e-11
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 58 9e-09
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 53 2e-07
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 53 2e-07
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 52 6e-07
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 52 8e-07
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 52 8e-07
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 51 1e-06
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 44 1e-04
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 41 0.001
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 40 0.002
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 226 bits (553), Expect = 1e-59
Identities = 128/252 (50%), Positives = 155/252 (61%)
Frame = +2
Query: 122 MSTIAAPLSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTND 301
MS A ++G R G VRTQNVM NIVK+SLGPVGLDKMLVDDIGDVT+TND
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 302 GATILKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 481
GATIL+MLEVEHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSI
Sbjct: 61 GATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSI 120
Query: 482 ISGYRLXCKEAVKYIQDNLTVTVESLGQAVSDQHSQNXYVV*TNWS*CRFLLXXXXXXXX 661
ISGYRL +E+ KYI++ L VE LG+ ++ F
Sbjct: 121 ISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVL 180
Query: 662 XXQNNEPQRKHYIPYQSY*HSESPRXSAXXSVLVKGYALNCTVPSQACPXTFSXAKIPCP 841
+ + + P + ++ SA S L+ GYALN +Q P S AKI C
Sbjct: 181 SVKMTNQRGEIKYPIKGINILKAHGQSARDSYLLNGYALNTGRAAQGMPLRVSPAKIACL 240
Query: 842 DFSLPXT*XEXG 877
DF+L T + G
Sbjct: 241 DFNLQKTKMQLG 252
Score = 58.4 bits (135), Expect = 7e-09
Identities = 46/120 (38%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Frame = +3
Query: 558 LXRPSLINTAKTTMSSKLIGADADFFSEMVVXAAQAIKTMNPRGNTIYPXXXXXXXXXXX 737
L + LIN AKT+MSSKLI D+DFF+ +VV A ++K N RG YP
Sbjct: 146 LGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHG 205
Query: 738 XVPXXVYLSKAMX*TALYHHRHAQXHSXXPRSPALI----FXCQXPXMKXGVXVPVTDPQ 905
YL AL R AQ SPA I F Q M+ GV V V DP+
Sbjct: 206 QSARDSYLLNGY---ALNTGRAAQGMPLRV-SPAKIACLDFNLQKTKMQLGVQVVVNDPR 261
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 123 bits (297), Expect = 2e-28
Identities = 60/112 (53%), Positives = 86/112 (76%), Gaps = 2/112 (1%)
Frame = +2
Query: 170 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGD--VTVTNDGATILKMLEVEHPA 343
G+ R + + ++VKS+LGP G+DK+L VTVTNDGATILK L +++PA
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNPA 75
Query: 344 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 499
AKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GYR+
Sbjct: 76 AKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRM 127
Score = 31.5 bits (68), Expect = 0.86
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 564 RPSLINTAKTTMSSKLIGADADFFSEMVVXAAQAIK 671
R L+ A TT+ SK++ D + F+EM V A +K
Sbjct: 151 RSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLK 186
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 122 bits (293), Expect = 5e-28
Identities = 58/139 (41%), Positives = 95/139 (68%)
Frame = +2
Query: 164 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA 343
S G N+ ++V+++LGP G+DK++ DD G VT++NDGATI+K+L++ HPA
Sbjct: 19 SQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPA 78
Query: 344 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKY 523
AK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I YR A+
Sbjct: 79 AKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAK 138
Query: 524 IQDNLTVTVESLGQAVSDQ 580
+++ L V++E G++V ++
Sbjct: 139 VKE-LAVSIE--GKSVEEK 154
Score = 37.5 bits (83), Expect = 0.013
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +3
Query: 573 LINTAKTTMSSKLIGADADFFSEMVVXAAQAI 668
L A TT+SSKLIG + +FF+ MVV A AI
Sbjct: 158 LAKCAATTLSSKLIGGEKEFFATMVVDAVMAI 189
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 114 bits (275), Expect = 7e-26
Identities = 54/124 (43%), Positives = 82/124 (66%)
Frame = +2
Query: 158 TRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEH 337
TR G + N+ I++SSLGP G+DKML GD+T+TNDGATIL+ ++V++
Sbjct: 22 TRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDN 81
Query: 338 PAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAV 517
AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY + + AV
Sbjct: 82 QIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAV 141
Query: 518 KYIQ 529
++++
Sbjct: 142 EHLE 145
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 109 bits (263), Expect = 2e-24
Identities = 52/136 (38%), Positives = 84/136 (61%)
Frame = +2
Query: 173 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 352
D +N+ I ++SLGP G++KM+++ + + VTND ATI+ LE++HPAAK+
Sbjct: 26 DEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKL 85
Query: 353 LVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQD 532
LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY +AV+ ++
Sbjct: 86 LVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQ 145
Query: 533 NLTVTVESLGQAVSDQ 580
+ E++ D+
Sbjct: 146 LVETGSETMDVRNKDE 161
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 108 bits (259), Expect = 6e-24
Identities = 53/137 (38%), Positives = 86/137 (62%)
Frame = +2
Query: 143 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKM 322
LS + R G V N+ +I++++LGP + KML+D G + VTNDG IL+
Sbjct: 8 LSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRE 67
Query: 323 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLX 502
L+V HPAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 68 LDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKA 127
Query: 503 CKEAVKYIQDNLTVTVE 553
++++ + D + ++++
Sbjct: 128 LEDSIA-VLDKIAMSID 143
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 107 bits (258), Expect = 8e-24
Identities = 57/127 (44%), Positives = 77/127 (60%)
Frame = +2
Query: 173 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKV 352
+ +R N+ + V++SLGP G+DKM+ G+V +TNDGATIL +EV PAAK+
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKM 86
Query: 353 LVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQD 532
LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I C +A+ I
Sbjct: 87 LVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAID-ILT 145
Query: 533 NLTVTVE 553
+ V VE
Sbjct: 146 AMAVPVE 152
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 89.0 bits (211), Expect = 4e-18
Identities = 42/111 (37%), Positives = 66/111 (59%)
Frame = +2
Query: 218 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDG 397
+++KS+LGP G KMLV GD+ +T DG T+LK +++++P A ++ A QD+ GDG
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDG 90
Query: 398 TTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQDNLTVTV 550
TTS VI EL+K ++ + +HP ++ G+ + K A DN V
Sbjct: 91 TTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEI-AKRATLQFLDNFKTPV 140
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 88.2 bits (209), Expect = 7e-18
Identities = 39/111 (35%), Positives = 68/111 (61%)
Frame = +2
Query: 218 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQLQDEEVGDG 397
+++KS+LGP G KMLV GD+ +T DG T+LK +++++P A ++ A QD+ GDG
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDG 90
Query: 398 TTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQDNLTVTV 550
TTS VI EL+K ++ + +HP ++ G+ + + ++++ T V
Sbjct: 91 TTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVV 141
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 65.3 bits (152), Expect = 6e-11
Identities = 28/69 (40%), Positives = 48/69 (69%)
Frame = +2
Query: 323 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLX 502
++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 503 CKEAVKYIQ 529
+ AV++++
Sbjct: 61 SRVAVEHLE 69
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 58.0 bits (134), Expect = 9e-09
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Frame = +2
Query: 224 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 391
V +LGP G + +L + + V NDG TI K +E +E+ A ++ E+A +E G
Sbjct: 59 VSITLGPRGRNVVLAEK-DTIKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAG 117
Query: 392 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQ 529
DGTT+ +I+A E++K + + S+ +G KE V+ +Q
Sbjct: 118 DGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRVLQ 163
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 218 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 385
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 76 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDL 135
Query: 386 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAV 517
GDGTT+ V++A L+ ++V +P I G K V
Sbjct: 136 AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALV 179
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Frame = +2
Query: 233 SLGPVGLDKMLVDDIGDVTVTNDGATILKMLEV----EHPAAKVLVELAQLQDEEVGDGT 400
+LGP G + +L D+ G V NDG TI + +E+ E+ A ++ E+A ++ GDGT
Sbjct: 75 TLGPRGRNVVL-DEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGT 133
Query: 401 TSVVIIAAELLKNADELVKTKIHPTSIISG 490
T+ I+A E++K+ V + +P S+ G
Sbjct: 134 TTASILAREIIKHGLLSVTSGANPVSLKRG 163
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 52.0 bits (119), Expect = 6e-07
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Frame = +2
Query: 218 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 385
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 76 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 135
Query: 386 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQ 529
GDGTT+ V++A + ++V +P I G K V ++
Sbjct: 136 AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 51.6 bits (118), Expect = 8e-07
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 218 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 385
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 80 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 139
Query: 386 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAV 517
GDGTT+ V++A + ++V +P I G K V
Sbjct: 140 AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 51.6 bits (118), Expect = 8e-07
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = +2
Query: 218 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHP----AAKVLVELAQLQDEE 385
++V +LGP G + +L G + NDG T+ + +E+E P AK++ + A ++
Sbjct: 80 DLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDL 139
Query: 386 VGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAV 517
GDGTT+ V++A + ++V +P I G K V
Sbjct: 140 AGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALV 183
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Frame = +2
Query: 233 SLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPAAKVLVELAQ----LQDEEVGDGT 400
+LGP G + +L + G + NDG T+LK +E+E P V V+L + ++ GDG+
Sbjct: 69 TLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGS 128
Query: 401 TSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAV 517
T+ +I+A L+ +++ +P + G K V
Sbjct: 129 TTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALV 167
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Frame = +2
Query: 224 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 391
VK ++GP G + ++ G VT DG T+ K +E +++ A ++ ++A ++ G
Sbjct: 58 VKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAG 117
Query: 392 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQD--NLTVTVESLGQ 565
DGTT ++ + + V ++ + G +L V +Q + T E + Q
Sbjct: 118 DGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRARMISTSEEIAQ 177
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Frame = +2
Query: 224 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLE----VEHPAAKVLVELAQLQDEEVG 391
VK ++GP G + ++ G VT DG T+ K +E +++ A ++ ++A ++ G
Sbjct: 57 VKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAG 116
Query: 392 DGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLXCKEAVKYIQD--NLTVTVESLGQ 565
DGTT ++ + + V ++ + G + V ++ + T E + Q
Sbjct: 117 DGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQ 176
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +2
Query: 224 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILKMLEVEHPA----AKVLVELAQLQDEEVG 391
VK ++GP G + ++ G +T DG T+ K + + A A+++ ++A ++ G
Sbjct: 57 VKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAG 116
Query: 392 DGTTSVVIIAAELL 433
DGTT ++ +L
Sbjct: 117 DGTTCATVLTQAIL 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,472,899
Number of Sequences: 28952
Number of extensions: 306191
Number of successful extensions: 663
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2314656624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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