Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I17
         (1076 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600...    30   3.6  
07_01_0479 + 3606663-3607448                                           29   6.4  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    29   8.4  

>01_06_0090 + 26358051-26359157,26359582-26359701,26359968-26360099,
            26360194-26360375,26360488-26360602,26362001-26362135,
            26362261-26362395
          Length = 641

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 990  PPXPXXPXVSPFXRXXXXXXPPXPPPAGR 1076
            PP P  P +S   R      PP PPPA R
Sbjct: 273  PPPPPMPALSVCGRAAAPPPPPPPPPARR 301


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 768 PPPPPXPXXXGPXPRG 815
           PPPPP P   GP P G
Sbjct: 201 PPPPPGPFMRGPPPMG 216


>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
            32237909-32239263,32240399-32240460,32240544-32241144,
            32241229-32241310,32241778-32241840
          Length = 1111

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +3

Query: 990  PPXPXXPXVSP--FXRXXXXXXPPXPPP 1067
            PP P  P V+P  F R      PP PPP
Sbjct: 965  PPPPPPPNVAPPPFTRQDIPPPPPSPPP 992


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,389
Number of Sequences: 37544
Number of extensions: 210605
Number of successful extensions: 2983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2543
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3211228900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)