Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I16
         (925 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   1.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          24   1.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           24   1.9  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   2.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   4.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   7.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.8  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 543 YFRGSGASAVIYRQFSHXEGLVVEPSF 463
           +    G +   Y+Q  H  G+VV+P F
Sbjct: 5   FLMNPGTALPTYQQPQHISGVVVDPKF 31


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 543 YFRGSGASAVIYRQFSHXEGLVVEPSF 463
           +    G +   Y+Q  H  G+VV+P F
Sbjct: 5   FLMNPGTALPTYQQPQHISGVVVDPKF 31


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 543 YFRGSGASAVIYRQFSHXEGLVVEPSF 463
           +    G +   Y+Q  H  G+VV+P F
Sbjct: 5   FLMNPGTALPTYQQPQHISGVVVDPKF 31


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 543 YFRGSGASAVIYRQFSHXEGLVVEPSF 463
           +    G +   Y+Q  H  G+VV+P F
Sbjct: 5   FLMNPGTALPTYQQPQHISGVVVDPKF 31


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 551 ASPAKTASELPXQNIKASAPS 613
           +SPA+TAS L  Q++ ++A S
Sbjct: 156 SSPAETASSLSPQSVASTASS 176


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 551 ASPAKTASELPXQNIKASAPS 613
           +SPA+TAS L  Q++ ++A S
Sbjct: 147 SSPAETASSLSPQSVASTASS 167


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 228 RSHR*GCCCTVCPR 187
           R+H   C CT+CP+
Sbjct: 2   RTHTLPCKCTICPK 15


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 311 LTRDGTPWSTATSCGSATDRILSKSTS 391
           +TR  T  ST TS    +D  LSK  S
Sbjct: 383 ITRKSTSSSTHTSSQQTSDSFLSKRNS 409


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 222 HR*GCCCTVCPRGL 181
           HR G CC  CP  L
Sbjct: 99  HRPGRCCKTCPGDL 112


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 392 GKYFLTISCPLPTHSL*QYSMVFRLL 315
           G  F T+   +P H+  +Y  VF++L
Sbjct: 263 GSVFNTVLELMPKHACSEYCRVFKML 288


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  APNKMKLLVVFAMCVLAASA 137
           APN  +  VV+A C L A+A
Sbjct: 123 APNGHQTQVVYASCKLQAAA 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,296
Number of Sequences: 336
Number of extensions: 2888
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25858250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)