Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I16
         (925 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.0  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 340 CYKLWVGNGQDIVKKYFPLSFRTHHGRKLRQAHLQKLQPRSE 465
           C+K  +   +D + +Y  +S R HH R      L++L+ + E
Sbjct: 678 CHKDEIKTARDTINEYKEISARNHHERDKMMTRLKELETQME 719


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 222  HR*GCCCTVCPRGL--G*KGSCCP 157
            H+ G  C VCPRG+    KG C P
Sbjct: 4552 HKNGFLCVVCPRGMYGNSKGECSP 4575


>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 25/89 (28%), Positives = 42/89 (47%)
 Frame = +1

Query: 121 CSPPAPASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARXSIVQNVVN 300
           C P  PA    P T   + T T+   C   +S VT T  ++R   T  +    I     +
Sbjct: 319 CYPNVPACVLIPATTPCVATTTT---CFKETS-VTKTE-FIRPTVTCTETTTKIRPPSYD 373

Query: 301 NLIIDKRRNTMEYCYKLWVGNGQDIVKKY 387
           ++ ++KR  T++YC  +W   GQ  +++Y
Sbjct: 374 HVHVEKRSRTIKYCI-IW-SRGQMQLQRY 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,639,906
Number of Sequences: 59808
Number of extensions: 383832
Number of successful extensions: 977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)