Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I16
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homo...    37   0.023
U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protei...    37   0.023
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homolog
           protein.
          Length = 281

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 16  DLTXRNSLKILICS-LESDRKRLLTK*NFSLCSQCACS-PPAPASWNYPRTA*ALLTKTS 189
           DL+  + L+ L C  L+ D+K+     N S  SQ  CS PPA  S  + RTA   L KT 
Sbjct: 48  DLSNESELRSLFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAHNELEKTR 107

Query: 190 RTN 198
           R N
Sbjct: 108 RAN 110


>U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protein 1
           protein.
          Length = 281

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 16  DLTXRNSLKILICS-LESDRKRLLTK*NFSLCSQCACS-PPAPASWNYPRTA*ALLTKTS 189
           DL+  + L+ L C  L+ D+K+     N S  SQ  CS PPA  S  + RTA   L KT 
Sbjct: 48  DLSNESELRSLFCGKLKVDKKQSSCASNASTSSQPYCSSPPARKSSKHSRTAHNELEKTR 107

Query: 190 RTN 198
           R N
Sbjct: 108 RAN 110


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 379 KKYFPLSFRTHHGRKLRQAHLQKLQPR 459
           +++F L ++    +KLR+AHL+ +Q R
Sbjct: 129 EEWFRLKYKPDDAKKLREAHLENVQKR 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,783
Number of Sequences: 27780
Number of extensions: 280290
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)