Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I16
         (925 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    35   0.088
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    30   1.9  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   2.5  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    29   3.3  
At2g35270.1 68415.m04326 DNA-binding protein-related contains Pf...    28   7.6  
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71...    28   7.6  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 304 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 402
           +++D +    EY  KL + +G D   KYFPL+F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 304 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 402
           +++D +    +Y  KL + +G D   K+FPL+F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 120 VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYD 230
           VLA + G  ELS    SP+ Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSP---SPAEQEIESFLYNAINMGFFD 103


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1103

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -1

Query: 199  SLSSRSWLEGLMLSADSSTTPALAASTHIAN 107
            S+S   WLEG  L  DS  T    A  HIAN
Sbjct: 1065 SVSFNPWLEGEALCVDSMITEQQDAQIHIAN 1095


>At2g35270.1 68415.m04326 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 285

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 143 DAGAGGEHAHCEHNEKFH 90
           D GAGG H H  HN   H
Sbjct: 33  DGGAGGNHHHHHHNHNHH 50


>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:719291)
            [Arabidopsis thaliana]
          Length = 2603

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +1

Query: 277  SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF--RTHHGRKLRQAHLQKL 450
            ++ + + N L++      +    +      +  VK+  P+     +H  +K  ++H +K 
Sbjct: 2316 NVAEPIANELVLQAHSCNVSSSIEQQEDFSKQKVKEIKPVKSGRSSHEEKKAGKSHEEKK 2375

Query: 451  -QPRSEARFHNQSLXMRELPINYRG 522
             +PR    FHN  +   EL + Y G
Sbjct: 2376 SRPRKMMEFHNIKISQVELLVTYEG 2400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,949
Number of Sequences: 28952
Number of extensions: 261436
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)