Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I15
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   5.2  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   6.9  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   6.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   9.1  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 500  YIGLGLNGGSVEQAVSLEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW 333
            YIG G    +   + SL  ++ AGP  Y GSR+   +   L+     W P     W
Sbjct: 1460 YIGTGRGFATARLSFSLLFSRFAGPSIYLGSRT---LLMLLFGTMTVWIPHLIYFW 1512


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -2

Query: 500  YIGLGLNGGSVEQAVSLEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW 333
            YIG      +V    SL  ++ +GP  Y GSR    +   L+     W P Y   W
Sbjct: 1302 YIGTSRGFATVRVPFSLLYSRFSGPSLYFGSR---LMYMLLFGSITAWLPHYIYFW 1354


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 230 HLDTAIAVPGQLVALYVLSGAVLAVA*RSAG*TSGTK---PEQRTAPELN 90
           H D  IAVPG L+ +       L  A R  G   G+K   PE  T  E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 363 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGA 244
           S + SLFS       R   RF        F G++GW  +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 293  RRRFSKEESDGLRYLAHEE-HXHLDTAIAVP 204
            RRR+SK+ S  L  + +EE H  L + I +P
Sbjct: 946  RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,761
Number of Sequences: 5004
Number of extensions: 65230
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)