Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I15
         (966 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    30   2.0  
At5g48385.1 68418.m05980 expressed protein                             29   6.1  
At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR cla...    29   6.1  
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    29   6.1  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   8.1  
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    28   8.1  
At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identic...    28   8.1  
At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identic...    28   8.1  

>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = +2

Query: 257 ADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNTR 427
           A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D G  + +ESH NT+
Sbjct: 102 ANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDAGDFKGVESHSNTQ 158


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 452 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 276
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 275 EESDGLRY 252
            E     Y
Sbjct: 61  LEDQEKEY 68


>At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 205 LASLSHCTCYRALCWRWPEGRLDEPLARSLSKEQHQN*T 89
           L SL + TCYR   W W E     P  R  + E+  N T
Sbjct: 581 LTSLCYVTCYREALWMWKEVEKAVPGLRIEATEKWFNMT 619


>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/54 (27%), Positives = 17/54 (31%)
 Frame = +1

Query: 784 PRPXPXSXPXXXXPPXXXTPXXXPPXSSXLXXXXAXPXALXPPXXXLLPXLXXP 945
           P P P   P    PP    P   PP         + P +  PP     P L  P
Sbjct: 50  PSPEPEPEPADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPPQLPPP 103


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +1

Query: 790 PXPXSXPXXXXPPXXXTPXXXPPXSSXLXXXXAXPXALXPPXXXLLPXL 936
           P P S P    PP   +P    P  S        P  L  P   LLP L
Sbjct: 589 PSPPSSPSPPLPPVIPSPPIVGPTPSSPPPSTPTPGTLLHPHHLLLPQL 637


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 827 PXLXPXXXXPPXLHXSFXXPPHLRPFXHHXXXSXPXXXXPTXSLXP 964
           P   P    PP        PP L PF  H          PT SL P
Sbjct: 91  PPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPPPTPSLPP 136


>At2g14120.2 68415.m01573 dynamin-like protein 2b (ADL2b) identical
           to dynamin like protein 2b (ADL2b) [Arabidopsis
           thaliana] GI:19032339
          Length = 780

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 475 EALNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM 371
           E L R+  SR+  P + C     D LVK +  CMM
Sbjct: 430 EVLVRRQISRLLDPSLQCARFIFDELVKISHQCMM 464


>At2g14120.1 68415.m01572 dynamin-like protein 2b (ADL2b) identical
           to dynamin like protein 2b (ADL2b) [Arabidopsis
           thaliana] GI:19032339
          Length = 780

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 475 EALNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM 371
           E L R+  SR+  P + C     D LVK +  CMM
Sbjct: 430 EVLVRRQISRLLDPSLQCARFIFDELVKISHQCMM 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,533
Number of Sequences: 28952
Number of extensions: 382551
Number of successful extensions: 1081
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)