Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I14
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.18 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.94 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   5.0  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 274 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 167
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 391 LNSLKLEIHNYLQSCFKLNASLEFNDKVY 305
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 763 PPPXXXPXPXXPXXXPXXXPPPPXXP 840
           PP    P P  P   P   PPPP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 766 PPXXXPXPXXPXXXPXXXPPPPXXPP 843
           PP   P P  P        PPP  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 211 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTLRMIKS 35
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I++
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 763  PPPXXXPXPXXPXXXPXXXPPPPXXPPXXXXXP 861
            PP    P P  P   P   PPPP  PP     P
Sbjct: 1699 PPQMSAPTPPPP---PMSVPPPPSAPPMPAGPP 1728


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 763 PPPXXXPXPXXPXXXPXXXPPPPXXPP 843
           P P   P P  P       PPPP  PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -2

Query: 376 LEIHNYLQSCFKLNASLEFNDKVYFPNDFACPMTAIAGPALINPSRTLRPTFSI 215
           L +H YL +C +  + +E    ++    +   +T+I  P +++PS+ +    S+
Sbjct: 130 LLLHLYLLNCHEQGSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSL 183


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 163 ASTNAKTKLKIRTKFILPKFYSAGEFK--IPIQYRSTRTLRMIKS*EFPIVSR 11
           + T++ T  ++ T  ++  FY   + +  +PIQ    + L ++++  FP VSR
Sbjct: 552 SDTSSVTVRRLATSTLIRLFYYYYDLRDAVPIQETLAKMLEILETPSFPFVSR 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,577
Number of Sequences: 5004
Number of extensions: 46279
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)