Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I13
         (991 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    28   0.13 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.4  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   8.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   8.5  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 244 RASCHIRVGSWIHTHRHRIQIWNRGPSGKG 333
           R  CHI + S+ +T R     WN GP+  G
Sbjct: 178 RQLCHIEIESFGYTMRDIRYKWNEGPNSVG 207


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 326 PLGPRFHICMRCLCVCIQLPTRI 258
           P+G  +  CM+C CV +Q   RI
Sbjct: 56  PIGVLY--CMKCECVPLQKKRRI 76


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 39  KIWAIWSFHSQWTSGPV 89
           ++WA W   S +  GPV
Sbjct: 284 QLWATWDPQSPFIDGPV 300


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 309  ESRTKWEGPXTKKFSEGLKRESIFITTKLWNSYHER 416
            +S+  WEG   +    G + E+   T +   +YH R
Sbjct: 935  QSKVSWEGNTERVLVPGDQTEAGVFTLRPATTYHIR 970


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,637
Number of Sequences: 336
Number of extensions: 4331
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28133776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)