Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I12
         (1004 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    31   1.7  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   5.2  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   6.9  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    29   6.9  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   9.1  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    24   9.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    24   9.7  

>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 380 YILKLTSRLNNTSIYGVCLKDHFPIALAEPRTSIAGPALTMP 255
           ++L L+  L   S Y + +K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
 Frame = +2

Query: 773 PXLPFXFLRXPXXXGGXGFXXPXKT--TPPPPXXXAXLXFWGPXXXXPPPPXXP 928
           P +P  F+  P   GG     P      PPPP     +    P    PPPP  P
Sbjct: 67  PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 836 PXKTTPPPPXXXAXLXFWGPXXXXPPPPXXPXXP 937
           P    PPPP   A      P    PPPP  P  P
Sbjct: 50  PMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPP 83


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 836 PXKTTPPPPXXXAXLXFWGPXXXXPPPPXXPXXP 937
           P    PPP    A     GP    PPPP  P  P
Sbjct: 387 PGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAP 420


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 836 PXKTTPPPPXXXAXLXFWGPXXXXPPPPXXP 928
           P  + PPPP     L   G     PPPP  P
Sbjct: 537 PVSSIPPPPPIAGLLAANGTNVPIPPPPPPP 567


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 824 GFXXPXKTTPPPPXXXAXLXFWGPXXXXPPPPXXPXXP 937
           G   P    PPPP         GP    PPPP  P  P
Sbjct: 340 GMRYPGGMPPPPPPRYPSA---GPGMYPPPPPSRPPAP 374


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 824 GFXXPXKTTPPPPXXXAXLXFWGPXXXXPPPPXXPXXP 937
           G   P    PPPP         GP    PPPP  P  P
Sbjct: 350 GMRYPGGMPPPPPPRYPSA---GPGMYPPPPPSRPPAP 384


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 24.2 bits (50), Expect(2) = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 815 GGXGFXXPXKTTPPPP 862
           GG G+  P    PPPP
Sbjct: 291 GGGGYSAPAAAPPPPP 306



 Score = 22.2 bits (45), Expect(2) = 9.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 893 PXXXXPPPPXXPXXPA 940
           P    PPPP  P  PA
Sbjct: 298 PAAAPPPPPPPPPPPA 313


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 24.2 bits (50), Expect(2) = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 815 GGXGFXXPXKTTPPPP 862
           GG G+  P    PPPP
Sbjct: 291 GGGGYSAPAAAPPPPP 306



 Score = 22.2 bits (45), Expect(2) = 9.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 893 PXXXXPPPPXXPXXPA 940
           P    PPPP  P  PA
Sbjct: 298 PAAAPPPPPPPPPPPA 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,745
Number of Sequences: 27780
Number of extensions: 265557
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)