Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I12
         (1004 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    31   1.6  
At3g50140.1 68416.m05481 expressed protein contains Pfam profile...    29   3.7  
At3g51290.1 68416.m05614 proline-rich family protein                   29   6.4  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   8.5  

>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +2

Query: 836 PXKTTPPPPXXXAXLXFWGPXXXXPPPPXXPXXPAXXXXRQXRXXXXP 979
           P +  PPPP   +      P    PPPP  P   +    RQ +    P
Sbjct: 596 PPRPPPPPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQAQPPPPP 643



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/49 (28%), Positives = 15/49 (30%)
 Frame = +2

Query: 782 PFXFLRXPXXXGGXGFXXPXKTTPPPPXXXAXLXFWGPXXXXPPPPXXP 928
           P      P   G      P    PPPP        + P    PPPP  P
Sbjct: 464 PLNLPSDPPSSGDHVTLLPPPPPPPPPPLFTSTTSFSPSQPPPPPPPPP 512


>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 508

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 836 PXKTTPPPPXXXAXLXFWGPXXXXPPPPXXPXXP 937
           P K  PPPP          P    PPPP  P  P
Sbjct: 4   PSKRRPPPPPPPPPRLLVLPPLPPPPPPPPPQLP 37


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 836 PXKTTPPPPXXXAXLXFWGPXXXXPPPP 919
           P    PPPP   +   FW P    PPPP
Sbjct: 107 PPPPPPPPPPPSSTWDFWDPF--IPPPP 132


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 836 PXKTTPPPPXXXAXLXFWGPXXXXPPPPXXP 928
           P  + PPPP        + P    PPPP  P
Sbjct: 447 PVYSPPPPPPPPPPPPVYSPPPPPPPPPPPP 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,692,974
Number of Sequences: 28952
Number of extensions: 245134
Number of successful extensions: 1013
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2460538344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)