Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I11
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...   113   3e-26
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...   102   6e-23
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    87   3e-18
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    84   3e-17
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    83   4e-17
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    75   1e-14
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.0  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    26   9.0  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score =  113 bits (273), Expect = 3e-26
 Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
 Frame = +2

Query: 179 ILVQMLKDEDNKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSW 355
           +L  +L++  NK C DC   + PRWASWNLG+F+CIRC+G+HR+LGVH+S+VKSV+LDSW
Sbjct: 15  VLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74

Query: 356 TPEQVVSLQQMGNSRARAVYEANL 427
           T EQ  ++ + GN RA   +EA L
Sbjct: 75  TDEQTENMTRWGNERANLYWEAKL 98


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score =  102 bits (245), Expect = 6e-23
 Identities = 46/95 (48%), Positives = 60/95 (63%)
 Frame = +2

Query: 209 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQM 388
           N  C DC  +G +WASWNLGIFLC+RCA IHR LG H+SKVKS++LD W+ +Q+  ++  
Sbjct: 20  NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQIEKMKHW 79

Query: 389 GNSRARAVYEANLPDSFRRPQNDMSLGIVHTRQIR 493
           GN  A   +  N P S   P N +S   V  + IR
Sbjct: 80  GNINANRYWNPN-PLSHPLPTNALSDEHVMEKYIR 113


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 37/75 (49%), Positives = 52/75 (69%)
 Frame = +2

Query: 182 LVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTP 361
           L Q+ +  +NK C DCDA  P+WAS NLGIF+C+ C+G HR LGV  S V+S+ +D+W+ 
Sbjct: 5   LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSE 64

Query: 362 EQVVSLQQMGNSRAR 406
            QV  ++  GNS A+
Sbjct: 65  RQVKMMEVGGNSNAK 79


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = +2

Query: 161 QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKV--- 331
           ++  Q +L  +    DNK C DC AK P W+S   GI+LC+ C+  HRN+GVHIS V   
Sbjct: 5   KEESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFL 64

Query: 332 KSVNLDSWTPEQVVSLQQMGNSRARAVYE 418
           +S  LDSWT  Q+  ++  GN  AR  ++
Sbjct: 65  RSTVLDSWTYAQLRVMRVGGNENARNYFK 93


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
 Frame = +2

Query: 176 NILVQMLKDED--NKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNL 346
           NI +QML+  D  N  C DC + K   W S N+ + LCI C+GIHR+LG HISK +S+ L
Sbjct: 714 NIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLL 773

Query: 347 DSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQ 451
           DS + +  V L ++GN+    VYE  L +   +P+
Sbjct: 774 DSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPK 808


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
 Frame = +2

Query: 128 SKSEKDRAKQIQDRCQNILVQMLKD--EDNKYCVDCDAKGP-RWASWNLGIFLCIRCAGI 298
           S+   D  ++ Q +  + LV+ LK+    ++ C DC+      W + N  + LCI C+GI
Sbjct: 655 SRHNSDSKEKKQTKSPS-LVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGI 713

Query: 299 HRNLGVHISKVKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPD 433
           HR+LG HI+K++S+ LD + PE V  L   GNS    +YE  + D
Sbjct: 714 HRSLGTHITKIRSLTLDKFNPETVDLLYATGNSFVNEIYEGGITD 758


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 520 WVPPPAAQSXLGXRNRRRDGSTEKEK 597
           ++ P + QS    RNRRR+ S  +EK
Sbjct: 179 FIDPESDQSIKSSRNRRRESSFSREK 204


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 879 PXXPXPTPPXXQXXLPPPXPXPG 947
           P  P P P       PPP P PG
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
 Frame = +3

Query: 825 PXP-PXXXPXFXPXXXXXXPXXPXPTPPXXQXXLPPPXPXP 944
           P P P   P   P      P  P P P       PPP P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
 Frame = +2

Query: 377 LQQMGNSRARAVYEANLPDSFRRPQNDMSLGIVHTRQIRTEEIHXRRSGC---------- 526
           L+QMGNS A+ +++A +  S +   +D      + + I   E+    SGC          
Sbjct: 147 LEQMGNSIAKHLWDAGVVFSKKILSDDWHYSFSNRKDINVLEL---GSGCGIVGISIASK 203

Query: 527 -PRQLPKVXWDXEIDEEMDRQKRKKKSATSS 616
            PR L  +    +  E M++   K KSA S+
Sbjct: 204 YPRALVSMTDTEDAIEFMEKNVEKNKSAMSN 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,681
Number of Sequences: 5004
Number of extensions: 68056
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)