Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I11
         (950 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   7.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   7.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 526  PPPAAQSXLGXRNRRRDGSTEKEKEVGDV 612
            PPPAA S     +RRR     K++  GDV
Sbjct: 1754 PPPAATSMKSVSSRRR--QQRKQQTPGDV 1780


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 526  PPPAAQSXLGXRNRRRDGSTEKEKEVGDV 612
            PPPAA S     +RRR     K++  GDV
Sbjct: 1750 PPPAATSMKSVSSRRR--QQRKQQTPGDV 1776


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 409 RVRGELTRLVQTSTKRHVLGNRSYAPNTNRRNTLXKEWVP 528
           RVRG    +V  S    V G+R      +R N   K + P
Sbjct: 28  RVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNP 67


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 409 RVRGELTRLVQTSTKRHVLGNRSYAPNTNRRNTLXKEWVP 528
           RVRG    +V  S    V G+R      +R N   K + P
Sbjct: 29  RVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNP 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,812
Number of Sequences: 438
Number of extensions: 6567
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)