Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_I10
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 268 7e-73
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 144 1e-35
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 143 4e-35
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 117 3e-27
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 1e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 68 2e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 5e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 5e-08
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.006
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.008
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 36 0.008
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.23
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.40
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 28 2.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 2.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.7
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 27 4.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 6.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 6.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.5
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 268 bits (657), Expect = 7e-73
Identities = 126/149 (84%), Positives = 132/149 (88%)
Frame = +2
Query: 251 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 430
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 431 PEEHPXPAH*GLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 610
PEEHP P P++NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 PEEHPCLLT-EAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
Query: 611 DGVSHTVPIYEGYALPHAILRLDLAGXDL 697
DGV+HTVPIYEGYALPHAI+RLDLAG DL
Sbjct: 157 DGVTHTVPIYEGYALPHAIMRLDLAGRDL 185
Score = 86.6 bits (205), Expect = 4e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +1
Query: 142 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 264
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 144 bits (350), Expect = 1e-35
Identities = 68/145 (46%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Frame = +2
Query: 266 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 442
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 443 PXPAH*GLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 622
P P N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++
Sbjct: 107 PLLLT-EPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLT 165
Query: 623 HTVPIYEGYALPHAILRLDLAGXDL 697
H+VPIY+G+++P AI + ++ G D+
Sbjct: 166 HSVPIYDGFSIPSAIQQEEIGGRDV 190
Score = 52.4 bits (120), Expect = 9e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 160 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 261
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 143 bits (346), Expect = 4e-35
Identities = 66/136 (48%), Positives = 95/136 (69%)
Frame = +2
Query: 287 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPXPAH*GL 466
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLT-EP 108
Query: 467 PSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 646
P P ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 109 PMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYES 168
Query: 647 YALPHAILRLDLAGXD 694
L H + RLD+AG D
Sbjct: 169 VVLNHLVGRLDVAGRD 184
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 148 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 252
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 117 bits (281), Expect = 3e-27
Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 9/147 (6%)
Frame = +2
Query: 290 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPXPAH*GL 466
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLT-EP 131
Query: 467 PSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVS 622
P P NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Query: 623 HTVPIYEGYALPHAILRLDLAGXDLXH 703
H +P+ EGY + +I + LAG D+ +
Sbjct: 192 HIIPVAEGYVIGSSIKTMPLAGRDVTY 218
Score = 40.7 bits (91), Expect = 3e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 160 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 243
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 68.5 bits (160), Expect = 1e-12
Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Frame = +2
Query: 278 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPXPA 454
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 455 H*GLPSTPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHT 628
L + P R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH
Sbjct: 121 TEPL-ANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHV 179
Query: 629 VPIYEGYALPHAILRLDLAG 688
+P+ G + R+ G
Sbjct: 180 IPVLNGERILSEAKRISWGG 199
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 160 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 255
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 67.7 bits (158), Expect = 2e-12
Identities = 36/108 (33%), Positives = 54/108 (50%)
Frame = +2
Query: 332 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPXPAH*GLPSTPRANREKMTQIM 511
+ +K I +G V NWD +W + +L+ P EHP + P NR K + M
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTLETM 121
Query: 512 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 655
FE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 122 FESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +1
Query: 145 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGR--YGTEGLVRR*RGTE 318
+EV+A+V+D GS + GF+G+D P+ V PS G + DGR +G E + + G E
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG----EFSDGRRLFGEEYIYKSNPGME 64
Query: 319 QK 324
K
Sbjct: 65 IK 66
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 63.3 bits (147), Expect = 5e-11
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = +2
Query: 251 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 424
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 425 VAPEEHPXPAH*GLPS-TPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVL 601
V P E+ PS P++ R+++ + FE + PA Y+ QAV +A+ ++T +++
Sbjct: 97 VNPTEYAMMI--TEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIV 154
Query: 602 DSGDGVSHTVPIYEGYALPHAILRLDLAG 688
D G + P+ +G + I + LAG
Sbjct: 155 DIGSDNASVTPVVDGLIIRKGIFKQSLAG 183
Score = 36.7 bits (81), Expect = 0.005
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 145 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 246
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 5e-08
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +2
Query: 347 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPX--PAH*GLPST-PRANREKMTQIMFE 517
PI+ G V +W+ ++ W H Y+ L P + P +P+ +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 518 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 688
P +A + ++ LYA G G+V+D G + PI +G + A +L L G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGG 228
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.006
Identities = 34/119 (28%), Positives = 46/119 (38%)
Frame = +3
Query: 405 PSTMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVV 584
P+ + PP +L+ SP + P + P S ++P TSP+ P +R P V
Sbjct: 963 PAAPPSIPPPLPVSNILS--SPTSEPPKDH--PPSAPL--SKPVSTSPAAPLARV--PPV 1014
Query: 585 PPVSCWTPATVSPTPYPSTRDTHSPTPSCVWTWPVXISXIPPHDXXSPXPXRXXXFPTP 761
P +S P P P PS P PS P+ S P S P P P
Sbjct: 1015 PKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 33.1 bits (72), Expect = 0.057
Identities = 22/59 (37%), Positives = 25/59 (42%)
Frame = +3
Query: 534 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSPTPSCVWTWPVXISXIPP 710
P T+P P T PV P S P+ P P PS+ P PS P S IPP
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP-SGIPP 1093
Score = 32.3 bits (70), Expect = 0.099
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Frame = +3
Query: 426 SPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPV--VPPVSC 599
+PP P + P P G P PP +PS +P VPPV
Sbjct: 1139 APPVPKPSVAAPPVPAPSGA-----PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP- 1192
Query: 600 WTPATVSPTPYPSTRDTHSPTPSCVWTWPVXISXIPP 710
P+ P P PS P PS P + +PP
Sbjct: 1193 -PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 29.9 bits (64), Expect = 0.53
Identities = 39/127 (30%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Frame = +3
Query: 402 IPSTMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRS----CSKHSTRPPCTSPS------ 551
+PST V P +TP + S P P P S S PP +PS
Sbjct: 1036 VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Query: 552 KPCSRCTRPV------VPPVSCWTPATVSPTPYPSTRDTHSPTPSCVWTWPVXISXIPPH 713
KP S PV VPPV P+ P P PS P PS P PP
Sbjct: 1096 KP-SVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152
Query: 714 DXXSPXP 734
S P
Sbjct: 1153 PAPSGAP 1159
Score = 27.9 bits (59), Expect = 2.1
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 2/108 (1%)
Frame = +3
Query: 417 SCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS 596
S +PP P P+P P S + +P P P T P VP S
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP-PPSTAPPVPTPS 1223
Query: 597 CWTPATVSPTPYPSTRDTHSPTPSC-VWTWPVXISXIP-PHDXXSPXP 734
P P P P+ + P PS + S +P PH SP P
Sbjct: 1224 AGLP----PVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSP 1267
Score = 27.1 bits (57), Expect = 3.7
Identities = 21/81 (25%), Positives = 27/81 (33%)
Frame = +3
Query: 426 SPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWT 605
+PP P + P P + PP +P P P VPP
Sbjct: 1158 APPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP----- 1212
Query: 606 PATVSPTPYPSTRDTHSPTPS 668
P+T P P PS P P+
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPT 1233
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.9 bits (79), Expect = 0.008
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +3
Query: 408 STMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVP 587
S+ S PP +T T +P P T SC+ ++ PP T S S P VP
Sbjct: 144 SSTSIPIPPTSTSSTDTNSNPLPTTST------SCTTSTSIPP-TGGSSSLSTPITPTVP 196
Query: 588 PVS-CWTPATVSPTPYPSTRDTHSPTPS 668
P S T + PT ST SP P+
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 34.3 bits (75), Expect = 0.025
Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +3
Query: 408 STMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVP 587
S+ S PP +T T SP P T SC+ ++ P T S S P VP
Sbjct: 201 SSTSIPIPPTSTSSTDTNSSPLPTTST------SCTTSTSIP--TGGSSSLSTPITPTVP 252
Query: 588 PVS-CWTPATVSPTPYPSTRDTHSPTPSCVWTWPVXISXIPP 710
P S T + PT ST SP P+ + S IPP
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS-IPP 293
Score = 31.9 bits (69), Expect = 0.13
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +3
Query: 402 IPSTMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPV 581
+PST + + + P T S P PT P S S ST PP S S + + +
Sbjct: 332 LPSTSTSCTTSTSIPP--TGNSTTPVTPTVP--PTSTSSTSTPPPPASTSSTGTSSSPLL 387
Query: 582 VPPVSCWTPATVSPTPYPSTRDTHSPTPS 668
SC T ++ PT +T T + P+
Sbjct: 388 STSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
Score = 30.3 bits (65), Expect = 0.40
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 507 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPYPSTRDTHSPTPSCVWTW 683
SC+ ++ PP T S S P VPP S T + PT ST +P P+ +
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSC 172
Query: 684 PVXISXIPP 710
S IPP
Sbjct: 173 TTSTS-IPP 180
Score = 29.5 bits (63), Expect = 0.70
Identities = 25/89 (28%), Positives = 37/89 (41%)
Frame = +3
Query: 402 IPSTMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPV 581
+P+T + + + P T S P PT P S S ST PP S S + +
Sbjct: 278 LPTTSTSCTTSTSIPP--TGNSTTPVTPTVP--PTSTSSTSTPPPPASTSSTGTSSSPLP 333
Query: 582 VPPVSCWTPATVSPTPYPSTRDTHSPTPS 668
SC T ++ PT +T T + P+
Sbjct: 334 STSTSCTTSTSIPPTGNSTTPVTPTVPPT 362
Score = 27.5 bits (58), Expect = 2.8
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Frame = +3
Query: 399 IIPSTMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRP 578
++ ++ SC + P T S P PT P S S T CT+ + T
Sbjct: 386 LLSTSTSCTTSTSIPP---TGNSTTPVTPTVP--PTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 579 VVPPVSCWTPATVSPTPYPSTRDTHSP--TPSCVWTWPVXISXIP 707
P++ T + PY ST T +P T +C + + + P
Sbjct: 441 TSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTP 485
Score = 27.1 bits (57), Expect = 3.7
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Frame = +3
Query: 408 STMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTS-PSKPCSRCTRPVV 584
+T + + P N+ +T P + P S ST + PS S T +
Sbjct: 286 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSI 345
Query: 585 PPVSCWTPATVSPT-PYPSTRDTHSPTP 665
PP T V+PT P ST T +P P
Sbjct: 346 PPTGNST-TPVTPTVPPTSTSSTSTPPP 372
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 35.9 bits (79), Expect = 0.008
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Frame = +3
Query: 393 FGIIPSTMSCVSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCT 572
+G+ + S SP +T SP PT + +S P SP+ P T
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAYMPSSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSAT 1609
Query: 573 RPVVPPVS-CWTPATVSPTP----YPSTRDTHSPT-PSCVWTWPVXISXIPPHDXXSP 728
P P S ++P + S +P Y T ++SPT PS T P P + SP
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 31.1 bits (67), Expect = 0.23
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Frame = +3
Query: 429 PPRNTPXLLTEGSPQPQGPTERR*PRS-CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWT 605
PP P +P P P S S+H + +PS + P+ P ++ W
Sbjct: 215 PPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWL 274
Query: 606 PATVSPTPYPSTRDTHSPTPSCVWT-WPVXISXIPP 710
P T PT P + + + P + PV IS P
Sbjct: 275 PMT-QPTFQPPSANVYQPASNANQVITPVSISDYRP 309
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +3
Query: 540 TSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDTHSPTPSCVWTWPVXISXIPPHDX 719
T+P P + + VVPP A V P T++P PS P +S +PP
Sbjct: 1434 TNPGAPSNHAPQ-VVPPAPMHAVAPVQPKAPGMV--TNAPAPSSAPAPPAPVSQLPPAVP 1490
Query: 720 XSPXP 734
P P
Sbjct: 1491 NVPVP 1495
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Frame = +3
Query: 426 SPPRNTPXLLTEGSPQPQGPTERR*P---RSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS 596
+PP +T + + G ++R P R+C+K ++PC RC + +
Sbjct: 261 TPPLSTVNKIIKKPKATTGKVKKRLPQAKRACAKCQKDNKKCDDARPCQRCIKAKTDCID 320
Query: 597 C---WTPATVSPTPYPSTRDTHSPTPS 668
P V PY DT + T S
Sbjct: 321 LPRKKRPTGVRRGPYKKLSDTSNNTKS 347
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.9 bits (59), Expect = 2.1
Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Frame = +3
Query: 399 IIPSTMSCVSPPRNTPXLLTEGSPQ-PQGPTERR*PRSCSKHSTRPPCTSP-----SKPC 560
I P+ + + PP + +P Q P R P S P +S S+
Sbjct: 843 ITPADVHPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTS 902
Query: 561 SRCTRPVVPPVSCWT---PATVSPTPYPSTRDT-HSPTPSCVWTWPVXISXIP-PHDXXS 725
S T P PP + T PA SP P P +T H PT S PV P P+ +
Sbjct: 903 SVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPVQQPSHPNPYTPVA 961
Query: 726 P 728
P
Sbjct: 962 P 962
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 593 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 688
+V+DSG +H +P+ + A+ R+D+ G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGG 190
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.7
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 423 VSPPRNTPXLLTEGSPQPQGPTERR*PRSCSKHSTRPPCTSPSK--PCSRCTRPVVPPVS 596
V+ P P + E +P P P + ++ S +TRP T+P K + +PV P
Sbjct: 890 VAVPAPIPAPVAEPAP-PAAPAKEVVEKAPSPPATRPKSTTPQKFDDDAWANKPVTEPPV 948
Query: 597 CWTPATVSP 623
+ TV P
Sbjct: 949 RASSVTVEP 957
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.7
Identities = 28/105 (26%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Frame = +3
Query: 408 STMSCVSPPRNTPXLLTEGS----PQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTR 575
S+ S + PP P GS PQ + PRS +PP S S+ S
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVS--NP 388
Query: 576 PVVPPVSCWTPATVSPTPYPSTRDTHSPTPSCVWTWPVXISXIPP 710
P PP A P ++R + P P+ P +PP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 470 STPRANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 619
S PR E ++I F + Y+AI A+L +YA R +++ G GV
Sbjct: 42 SRPRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGV 91
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 462 GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRC 569
G+P P P P+SC + C S+PC C
Sbjct: 636 GTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPC 671
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 555 PCSRCTRPVVPPVSCWTPATVSPTPYPST 641
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 531 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPS 638
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 199 NRPCTYRSHCLLPTRQLP 146
NRP YRSH + TR+ P
Sbjct: 323 NRPSNYRSHSSMGTRRSP 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,616,822
Number of Sequences: 5004
Number of extensions: 80018
Number of successful extensions: 313
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -