Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I09
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    30   0.53 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.7  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.7  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.7  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 178 LEEQLYNSVVVADYDSAVE--KSXH--LYEEKKSEVXTNVVNKLIRNNKMNCMEYAYQLW 345
           L E   +  V  D +S  E  K  H  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 346 LQXLQ 360
            + ++
Sbjct: 170 SKYIK 174


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 434 VHKLNRVFGEDKSELNWETIPDXV 363
           +H +     EDKS+L +ETIPD V
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPV 32


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +1

Query: 247 LYEEKKSEVXTNVVNKLIRNNKMNCMEYAYQLWLQXL 357
           L+ ++++++ T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 32  LFSKREAQL-TDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +1

Query: 130 FVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSXHLYEEKKSEVXTNVVNKLIRNN 309
           F+   ++   ++ N  +E  L     V  + +  E++ H++ +  S   T + NKL+  +
Sbjct: 232 FIKVEFSLSGEISNAAIEWYLLEKSRVV-HQNEFERNYHVFYQLLSGADTALKNKLLLTD 290

Query: 310 KMNCMEYAY 336
             NC +Y Y
Sbjct: 291 --NCNDYRY 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,906
Number of Sequences: 5004
Number of extensions: 39695
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)