Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I09
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    29   6.2  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    29   6.2  

>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +1

Query: 256 EKKSEVXTNVVNKLIRNNKMNCMEY---AYQLWLQXLQGTSSGIVSQLSSDLSSPKTRXS 426
           +K  EV TN++N  I    +N ME+    Y  W+  ++ T    + +L + +       +
Sbjct: 166 KKHFEVGTNIMNLFIGTLCVNAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLA 225

Query: 427 LCTSATVSL 453
            C +   +L
Sbjct: 226 ACVTFLTNL 234


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +1

Query: 256 EKKSEVXTNVVNKLIRNNKMNCMEY---AYQLWLQXLQGTSSGIVSQLSSDLSSPKTRXS 426
           +K  EV TN++N  I    +N ME+    Y  W+  ++ T    + +L + +       +
Sbjct: 166 KKHFEVGTNIMNLFIGTLCVNAMEHETKRYDFWIAEMKKTDQETLRKLKTAIRKQAMLLA 225

Query: 427 LCTSATVSL 453
            C +   +L
Sbjct: 226 ACVTFLTNL 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,726
Number of Sequences: 27780
Number of extensions: 231344
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)