Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I09
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   6.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   6.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.0  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 411
           P DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 411
           P DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 411
           P DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 411
           P DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 287 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 329


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 324 GVRLSTLAPXXPRXXVRDCFPVEFRLI 404
           G RL +LAP   R     C P E R I
Sbjct: 65  GRRLKSLAPLVLRGACPQCSPEETRQI 91


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 324 GVRLSTLAPXXPRXXVRDCFPVEFRLI 404
           G RL +LAP   R     C P E R I
Sbjct: 65  GRRLKSLAPLVLRGACPQCSPEETRQI 91


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQ 459
           P DS   L L V +  S  V LN++A+
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQ 459
           P DS   L L V +  S  V LN++A+
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQ 459
           P DS   L L V +  S  V LN++A+
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAE 245


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 539 PADSRACLVLAVAVGRSAIVALNIIAQ 459
           P DS   L L V +  S  V LN++A+
Sbjct: 287 PPDSGEKLTLGVTILLSLTVFLNLVAE 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,290
Number of Sequences: 438
Number of extensions: 3190
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)