Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_I07
         (921 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)             181   8e-46
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                142   5e-34
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   1e-10
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                62   5e-10
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)              61   1e-09
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)             29   5.3  
SB_36478| Best HMM Match : TatD_DNase (HMM E-Value=1.3)                29   5.3  
SB_55890| Best HMM Match : Filamin (HMM E-Value=0.02)                  29   7.0  
SB_13905| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-17)          29   7.0  
SB_47739| Best HMM Match : WCCH (HMM E-Value=3.5)                      28   9.2  

>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score =  181 bits (440), Expect = 8e-46
 Identities = 85/155 (54%), Positives = 106/155 (68%)
 Frame = +1

Query: 127 VTFNNGESIPVFGLGTWKSKPGEVTQAVKDAIDIGYRHIDCAYVYGNEKEVGEAITSKIK 306
           V  NNG  +PV GLGTWKSKPG+V  AVK AI  GYRHIDCAY Y NEKEVG+A+  ++ 
Sbjct: 4   VKLNNGLEMPVLGLGTWKSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKEVGDALR-ELL 62

Query: 307 EGVVTREDLFITSKLWNTFHRPDLVXGXLQETLDNLNVQYLDLYLIHWPQAYKEDGSLFP 486
             VV R+DLFITSKLWNT H P  V     ++L +L + YLDLYLIHWP ++++    FP
Sbjct: 63  GSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPLSFRDGDEFFP 122

Query: 487 TXQSGKIQFSDXDYVDXWKAMEPLXKEGLVXSIGV 591
             + G + ++  D  D WKAME L  EGLV +IG+
Sbjct: 123 KDEQGNVLYAYHDPCDTWKAMEKLVDEGLVKAIGL 157



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 594 NFNSKQLERLLQXATVKPVVNQVECHPLPHQKXL 695
           NFNSKQ++ +   A +KPV NQVECHPL +Q  L
Sbjct: 159 NFNSKQVDDICAIARIKPVANQVECHPLLNQAKL 192


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score =  142 bits (343), Expect = 5e-34
 Identities = 70/140 (50%), Positives = 91/140 (65%)
 Frame = +1

Query: 172 TWKSKPGEVTQAVKDAIDIGYRHIDCAYVYGNEKEVGEAITSKIKEGVVTREDLFITSKL 351
           TW+S   EV  AV+ AI++GYRHIDCA +YGNE E+GEA++  + EG V RE+LF+TSKL
Sbjct: 59  TWQSSKEEVGNAVRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKL 118

Query: 352 WNTFHRPDLVXGXLQETLDNLNVQYLDLYLIHWPQAYKEDGSLFPTXQSGKIQFSDXDYV 531
           W   H PD V    Q TL NL + YLDLYLIH P A+K+   L  +   G I ++     
Sbjct: 119 WCDSHHPDDVLPACQATLKNLQLDYLDLYLIHIPVAFKKGVRLPHSIAEGIIGYTPEGVQ 178

Query: 532 DXWKAMEPLXKEGLVXSIGV 591
           + W+AME L  +GL  +IGV
Sbjct: 179 NTWQAMEGLVAKGLCKAIGV 198



 Score = 52.0 bits (119), Expect = 7e-07
 Identities = 26/55 (47%), Positives = 37/55 (67%)
 Frame = +1

Query: 166 LGTWKSKPGEVTQAVKDAIDIGYRHIDCAYVYGNEKEVGEAITSKIKEGVVTRED 330
           L TW S  G+V  AV+ A ++GYR IDCA ++GNE   GEA++  + +G V RE+
Sbjct: 4   LCTWHSYKGKVGNAVRLAAELGYRLIDCAEIHGNE---GEALSGVLTKGKVKREE 55



 Score = 38.3 bits (85), Expect = 0.009
 Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 594 NFNSKQLERLLQXATVKPVVNQVECHP-LPHQK 689
           NF+ K+L +LL+ A++ P  NQVE HP LP +K
Sbjct: 200 NFSVKRLNKLLETASIVPACNQVELHPYLPQEK 232


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
 Frame = +1

Query: 127 VTFNNGESIPVFGLGTWKSKPGEVT-QAVKDAIDIGYRHIDCAYVYG-NEKEVGEAITSK 300
           V   +G ++PV G GT  +  GE T   VK A++ GYR ID A  Y  +E +V +AI   
Sbjct: 329 VLLASGYTMPVMGFGT--ATLGEDTLSVVKTALETGYRLIDTAQGYPLSEPQVAKAIA-- 384

Query: 301 IKEGVVTREDLFITSKLWNTFHRPDLVXGXLQETLDNLNVQYLDLYLIHWPQAYKEDGSL 480
             +  + R+D+FI +KL   +   +     ++ +L  L+  Y+DL+LIH     K     
Sbjct: 385 --DSGIPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIH----SKTCDDF 438

Query: 481 FPTXQSGKIQFSDXDYVDXWKAMEPLXKEGLVXSIGV 591
             T   G+ +     + + WKAME L ++G + S+GV
Sbjct: 439 LLTCAEGEPR---GTWKESWKAMEELHRQGKIRSLGV 472


>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 51/152 (33%), Positives = 73/152 (48%)
 Frame = +1

Query: 136 NNGESIPVFGLGTWKSKPGEVTQAVKDAIDIGYRHIDCAYVYGNEKEVGEAITSKIKEGV 315
           N+G  IP+ GLG          QAV  A++ GYR ID A  Y NE+ VGEA    ++   
Sbjct: 71  NDGRKIPLLGLGAHDIHS---KQAVLWALESGYRLIDTASRYHNEQSVGEA----VRCSN 123

Query: 316 VTREDLFITSKLWNTFHRPDLVXGXLQETLDNLNVQYLDLYLIHWPQAYKEDGSLFPTXQ 495
           + R ++++ +K++ T H          ++L  L + Y+DLYLIH+P              
Sbjct: 124 IPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFP------------VP 171

Query: 496 SGKIQFSDXDYVDXWKAMEPLXKEGLVXSIGV 591
           SG         V  W+AM  L   GL+ SIGV
Sbjct: 172 SG--------VVGSWQAMIDLRSRGLIRSIGV 195



 Score = 36.3 bits (80), Expect = 0.035
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +3

Query: 594 NFNSKQLERLLQXATVKPVVNQVECHPLPHQKXL 695
           NFN + LE L Q   V P VNQ+E HP    K L
Sbjct: 197 NFNIQHLEALRQQTGVVPAVNQIEVHPFLQMKEL 230


>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
          Length = 93

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 32/79 (40%), Positives = 47/79 (59%)
 Frame = +1

Query: 130 TFNNGESIPVFGLGTWKSKPGEVTQAVKDAIDIGYRHIDCAYVYGNEKEVGEAITSKIKE 309
           T ++G  IP FGLG +        QAV  A++ GYR ID A  Y NEK VGEA    ++E
Sbjct: 2   TLSDGYKIPRFGLGLYDLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGEA----LRE 57

Query: 310 GVVTREDLFITSKLWNTFH 366
             V R ++++ +K+++T H
Sbjct: 58  SAVPRSEVYLVTKVYHTDH 76


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 31/80 (38%), Positives = 49/80 (61%)
 Frame = +1

Query: 217 AIDIGYRHIDCAYVYGNEKEVGEAITSKIKEGVVTREDLFITSKLWNTFHRPDLVXGXLQ 396
           A+  GYR +D A +Y NEKEVG A+    K G + RED+++T+KL  +           +
Sbjct: 53  ALKNGYRMLDTADIYQNEKEVGSAVR---KSG-LKREDIYVTTKLKPSEEGHSNALKYAK 108

Query: 397 ETLDNLNVQYLDLYLIHWPQ 456
           E++  L++ Y+DL+LIH P+
Sbjct: 109 ESIKKLDIGYVDLFLIHTPR 128


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 481 RESRLPCRPGASVSGTD--PSTERSDCPGSPAGHRXPSPGDETCSTVS 344
           R+   P R G+    T+  PS  RSD   S  G    S GDE  ST+S
Sbjct: 151 RKHSTPARTGSQRESTERVPSVSRSDTSSSLTGSSPASLGDELESTLS 198


>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 16   THXREFLKI*IVGXIHDLRSSQAAAKLINKMAPK 117
            TH R+ LK+   G +H + S+Q++A+ + + A K
Sbjct: 1043 THERDLLKVERTGDLHSVVSAQSSAREMQRQAAK 1076


>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 761

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 178 KSKP-GEVTQAVKDAIDIGYRHIDCAYVYGNEKEVGEAITSKIK 306
           KS P G +   V  A  + YRH   +Y++G++ EV    T  +K
Sbjct: 6   KSHPIGTIAVGVAIAAAVYYRHSIKSYIFGDDNEVSALATCVVK 49


>SB_36478| Best HMM Match : TatD_DNase (HMM E-Value=1.3)
          Length = 489

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
 Frame = +1

Query: 85  AAKLINKMAPKIPVVTFNNGESIP-VFGLGTWKSKPGEVTQAVKDAIDIGYRHIDCAYVY 261
           A  ++N   PK   V F N  ++  + GL  +    G    +V++A+D   + + C + Y
Sbjct: 256 AKVVLNTAVPKKTKVQFFNPVALSQLMGLYQYTYAEGGAEASVREAVDAILQDVCCTFKY 315

Query: 262 GNEKEVGEAITSKIKEGVVTREDLFITSKLWNTFHRPDLVXGXLQETLDNLNVQYLDLYL 441
           G      + + +K     +  + L    K  +  H  DLV   L    D +N     + +
Sbjct: 316 GICFANSQGMLAKRSNNPMLLQFLQSLPKTLSGQHTQDLVVKILTCCPDLVNPYLSSMSI 375

Query: 442 IHWPQ 456
            + P+
Sbjct: 376 TYEPR 380


>SB_55890| Best HMM Match : Filamin (HMM E-Value=0.02)
          Length = 264

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 120 SCSDVQQWRIYSRVWIRNVEVEARRGDAG 206
           S SD+Q    +SR+WI++V+++ RR   G
Sbjct: 150 SRSDIQPAGDFSRLWIQSVDMDGRRKSFG 178


>SB_13905| Best HMM Match : F5_F8_type_C (HMM E-Value=4.7e-17)
          Length = 321

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 169 GTWKSKPGEVTQAVKDAIDIGYRHIDCA 252
           G+W + P +VT  ++  +D+G RH+ CA
Sbjct: 209 GSWCASPSDVTPFLQ--VDLGTRHVICA 234


>SB_47739| Best HMM Match : WCCH (HMM E-Value=3.5)
          Length = 932

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +1

Query: 109 APKIPVVTFNNGESIPVFGLGTWKSKPGE-VTQAVKDAIDIGYRHIDCAYVYGNEKEVGE 285
           AP  P+     GE      +G    K G+ +     + ID G R     Y+     ++ E
Sbjct: 189 APAEPLAPITEGEGRSEHKIGGSLVKRGDQIAVGALEGIDAGIREKGREYLVYTRGKILE 248

Query: 286 AITSKIKEGVVTREDLFITSK 348
               K+     T+EDLF   K
Sbjct: 249 RFDKKLATTGCTKEDLFEMGK 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,122,002
Number of Sequences: 59808
Number of extensions: 449845
Number of successful extensions: 1591
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)